Jatropha Genome Database
- JcCB0119431.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0119431.10 - phase: 1 /TE
(1413 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 442 e-124
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 424 e-118
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 422 e-118
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 411 e-114
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 296 4e-80
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 253 5e-67
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 245 1e-64
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 217 3e-56
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 179 9e-45
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 177 3e-44
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 165 2e-40
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 164 3e-40
IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA po... 137 4e-32
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud... 107 3e-23
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole... 102 2e-21
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H... 94 4e-19
IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA po... 89 2e-17
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 89 2e-17
IMGA|Medtr8g012170.1 polyprotein, putative chr08_pseudomolecule_... 86 2e-16
IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA po... 69 1e-11
IMGA|Medtr1g102700.1 hypothetical protein chr01_pseudomolecule_I... 68 3e-11
IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG... 68 4e-11
IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein, chr0... 67 9e-11
IMGA|Medtr4g045170.1 hypothetical protein chr04_pseudomolecule_I... 66 1e-10
IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H... 65 2e-10
IMGA|Medtr3g162300.1 retrotransposon like protein, putative chr0... 63 1e-09
IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger, C... 62 2e-09
IMGA|Medtr8g043360.1 Copia protein, related chr08_pseudomolecule... 60 1e-08
IMGA|Medtr5g049090.1 Polynucleotidyl transferase, Ribonuclease H... 59 1e-08
IMGA|Medtr3g097190.1 copia-type polyprotein, putative chr03_pseu... 59 2e-08
IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA po... 58 3e-08
IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative chr... 58 4e-08
IMGA|Medtr3g148550.1 Cyclin-like F-box; F-box protein interactio... 57 5e-08
IMGA|Medtr4g104330.1 hypothetical protein chr04_pseudomolecule_I... 55 2e-07
IMGA|Medtr7g135120.1 Copia protein, related chr07_pseudomolecule... 55 2e-07
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 442 bits (1136), Expect = e-124, Method: Compositional matrix adjust.
Identities = 232/513 (45%), Positives = 317/513 (61%), Gaps = 2/513 (0%)
Query: 868 LPATVEPTRVTQALKLPKWRQAMNVEFDALITNGTWVLVPPAAGQNLVGCKWIFRVKRNP 927
L T EPT +A K W +AM E AL GTW +V A +GC+WI++VK N
Sbjct: 733 LQTTPEPTTYVEASKHDCWNKAMQAELLALEKTGTWDIVDLPAYVKPIGCRWIYKVKHNA 792
Query: 928 DGTVAKYKARLVAKGYTQRPGIDFEDTFSPVLKPTTIRVILTMAVSKRWNVYQLDVNNAF 987
DG++ +YKARLVAKGYTQ G+D+ +T+SPV K TT+R+++ +A W+++QLDVNNAF
Sbjct: 793 DGSIERYKARLVAKGYTQIEGLDYFETYSPVAKLTTVRLVIALASIHNWHLHQLDVNNAF 852
Query: 988 LHGPLSENVYMQQPPGFIDSEKPHYVCKLVKALYGLRQAPRAWYQALRNCAVQFGFVQSK 1047
LHG L E+VYM PPG I+ KPH VCKL K+LYGL+QA R WY+ L + +Q ++Q+
Sbjct: 853 LHGELQEDVYMILPPG-INIAKPHQVCKLKKSLYGLKQASRQWYEKLTSVLIQQHYIQAS 911
Query: 1048 SDHSLFILQRGAKTCFFLVYVDDLLLTGNCNELIHLFISALGSKFSLKDPQKLNFFLGID 1107
SDHSLFI + LVYVDD++L G S L + F +KD +L +FLGI+
Sbjct: 912 SDHSLFIKKSSDSFTILLVYVDDIILAGTSLLEFQNIKSILDTSFKIKDLGQLKYFLGIE 971
Query: 1108 IHTTASGMFMSQHHYIRKLLVAARMEGVKPVSTPFATTTTLLKNVTGKGVNATEYRKLVG 1167
+ + G+ + Q Y LL + G KP+STP +T L + + + YR+LVG
Sbjct: 972 VAHSKLGISLYQRKYCLDLLHDSGHIGSKPISTPSDPSTKLHHDTSTPYDDIPAYRRLVG 1031
Query: 1168 ALQYLTWTRPDICYAVNKLSQFMQSPSSAHWEALKRLLRYLKSTIDYGIKITPQSAFHFH 1227
L YL TRPDI + +LSQF+ +P+ AH A R LRYLKS G+ S+
Sbjct: 1032 RLLYLNNTRPDITFITQQLSQFLSNPTIAHHNAALRTLRYLKSCPGKGLFFPRNSSLTLQ 1091
Query: 1228 AFSDADWXGDPLDRSSTTGYILYLGNVPISWASRKQKSVARSSTEAEYRAVASTASEVMW 1287
FSDADW G R S TG +LGN ISW ++KQ +V+RSS+EAEYRA+AS E+ W
Sbjct: 1092 GFSDADWAGCLDTRKSVTGQCFFLGNSLISWRTKKQTTVSRSSSEAEYRALASATCEIQW 1151
Query: 1288 VSSLLTELGVLSSVQVPVIYCDNISTTYVCQNPVYHSRMKHIEIDIHFVRDLVQKKKLRI 1347
+ LL +L + S + PV+YCDN S ++ NPV+H R KH+EID H VR+ +Q L++
Sbjct: 1152 LLYLLNDLHITCS-KPPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKLQAGVLKL 1210
Query: 1348 SHVSAQDQLADVLTKPQAKTVFALNRTKIGVSD 1380
VS+QDQ+AD TK F+L +K+G+ D
Sbjct: 1211 LPVSSQDQIADFFTKALLPKTFSLLLSKLGLID 1243
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 424 bits (1089), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/507 (43%), Positives = 312/507 (61%), Gaps = 4/507 (0%)
Query: 873 EPTRVTQALKLPKWRQAMNVEFDALITNGTWVLVPPAAGQNLVGCKWIFRVKRNPDGTVA 932
EP +A KL W+ AM VE AL GTW LV +GC+WI++VK + DGTV
Sbjct: 892 EPKSYAEASKLDCWKHAMQVELQALEKTGTWKLVDLPPNVKPIGCRWIYKVKFHADGTVE 951
Query: 933 KYKARLVAKGYTQRPGIDFEDTFSPVLKPTTIRVILTMAVSKRWNVYQLDVNNAFLHGPL 992
+YKARLVAKGY Q G+D+ DT+SPV K TT+R+++ ++ W+++QLDVNNAFLHG L
Sbjct: 952 RYKARLVAKGYNQIEGLDYLDTYSPVAKLTTVRLVIALSSINNWHLHQLDVNNAFLHGDL 1011
Query: 993 SENVYMQQPPGFIDSEKPHYVCKLVKALYGLRQAPRAWYQALRNCAVQFGFVQSKSDHSL 1052
E+VYM PPG I S K + VCKL K+LYGL+QA R WY+ L + + Q+ SD+SL
Sbjct: 1012 QEDVYMMVPPG-IKSSKLNQVCKLTKSLYGLKQASRKWYEKLTSVLFDQHYTQATSDYSL 1070
Query: 1053 FILQRGAKTCFFLVYVDDLLLTGNC-NELIHLFISALGSKFSLKDPQKLNFFLGIDIHTT 1111
F+ + LVYVDD++L GN +E H+ S L S F +KD +L +FLGI++ +
Sbjct: 1071 FVKKTSTSFTVLLVYVDDIILAGNSISEFSHI-KSILDSLFKIKDLGQLKYFLGIEVAHS 1129
Query: 1112 ASGMFMSQHHYIRKLLVAARMEGVKPVSTPFATTTTLLKNVTGKGVNATEYRKLVGALQY 1171
G+ + Q Y LL G KP+STP ++ L + + + R+LVG L Y
Sbjct: 1130 KLGISLCQRKYCLDLLADIGSLGSKPISTPSDSSIKLHLDSSSPFEDVPACRRLVGRLLY 1189
Query: 1172 LTWTRPDICYAVNKLSQFMQSPSSAHWEALKRLLRYLKSTIDYGIKITPQSAFHFHAFSD 1231
L TRPDI + +LSQF+ P+ AH A R+L+YLKS G+ S+ + FSD
Sbjct: 1190 LNNTRPDITFITQQLSQFLSQPTQAHHSAALRVLKYLKSCPGKGLFFPRSSSLNLQGFSD 1249
Query: 1232 ADWXGDPLDRSSTTGYILYLGNVPISWASRKQKSVARSSTEAEYRAVASTASEVMWVSSL 1291
ADW G R S +G +LGN ISW ++KQ +V++SS+EAEYRA+AS E+ W+ L
Sbjct: 1250 ADWAGCIDTRRSISGQCFFLGNSLISWRTKKQITVSKSSSEAEYRALASATCELQWILYL 1309
Query: 1292 LTELGVLSSVQVPVIYCDNISTTYVCQNPVYHSRMKHIEIDIHFVRDLVQKKKLRISHVS 1351
L +L + ++PV+YCDN S ++ NPV+H R KH+EID H +RD +Q L++ VS
Sbjct: 1310 LKDLHT-TCPKLPVLYCDNQSAIHIANNPVFHERTKHLEIDCHLIRDKLQSGVLKLLTVS 1368
Query: 1352 AQDQLADVLTKPQAKTVFALNRTKIGV 1378
+QDQ+AD TK F + +K+G+
Sbjct: 1369 SQDQVADFFTKALLPKPFNILLSKLGL 1395
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/490 (44%), Positives = 302/490 (61%), Gaps = 2/490 (0%)
Query: 873 EPTRVTQALKLPKWRQAMNVEFDALITNGTWVLVPPAAGQNLVGCKWIFRVKRNPDGTVA 932
EP +A K W++AM VE AL GTW V +GC+W+F++KR+ DG++
Sbjct: 866 EPKTYAEANKHECWQKAMQVELQALEQTGTWNFVDLPPNVKPIGCRWVFKIKRHADGSIE 925
Query: 933 KYKARLVAKGYTQRPGIDFEDTFSPVLKPTTIRVILTMAVSKRWNVYQLDVNNAFLHGPL 992
+YKARLVAKGYTQ G+D+ DTFSPV K TT+R+I+ +A W+++QLDVNNAFLHG L
Sbjct: 926 RYKARLVAKGYTQVEGLDYFDTFSPVAKLTTVRLIIALASINHWHLHQLDVNNAFLHGDL 985
Query: 993 SENVYMQQPPGFIDSEKPHYVCKLVKALYGLRQAPRAWYQALRNCAVQFGFVQSKSDHSL 1052
ENVYM PPG I ++ + VCKL K+LYGL+QA R WY L + ++ + Q+ SDHSL
Sbjct: 986 QENVYMTLPPG-ISAKHSNTVCKLNKSLYGLKQASRKWYDKLTSILLKHQYTQAHSDHSL 1044
Query: 1053 FILQRGAKTCFFLVYVDDLLLTGNCNELIHLFISALGSKFSLKDPQKLNFFLGIDIHTTA 1112
F + G LVYVDD++L G+ E S L + F +KD +L FFLG+++ +
Sbjct: 1045 FTKKTGTSYTILLVYVDDIILAGDSLEEFQYIKSILDTLFKIKDLGQLKFFLGLEVAHSQ 1104
Query: 1113 SGMFMSQHHYIRKLLVAARMEGVKPVSTPFATTTTLLKNVTGKGVNATEYRKLVGALQYL 1172
G+ + Q Y LL + G KP STP + L K+ + YR+L+G L YL
Sbjct: 1105 LGISLCQKKYCLDLLADSGTIGSKPASTPSDPSLKLHKDGALPYEDIPSYRRLIGRLLYL 1164
Query: 1173 TWTRPDICYAVNKLSQFMQSPSSAHWEALKRLLRYLKSTIDYGIKITPQSAFHFHAFSDA 1232
TRPDI Y +LSQF+ +P+ H A R+LRYLK+ G+ S +SDA
Sbjct: 1165 NTTRPDITYITQQLSQFLSAPTHTHHSAALRVLRYLKNCPGKGLFFPRNSPLQLQGYSDA 1224
Query: 1233 DWXGDPLDRSSTTGYILYLGNVPISWASRKQKSVARSSTEAEYRAVASTASEVMWVSSLL 1292
DW G R S +G +LGN ISW ++KQ +V+RSS+EAEYRA+AS E+ W+ LL
Sbjct: 1225 DWAGCLDTRRSISGQCFFLGNSLISWRTKKQVTVSRSSSEAEYRALASATCELQWLIYLL 1284
Query: 1293 TELGVLSSVQVPVIYCDNISTTYVCQNPVYHSRMKHIEIDIHFVRDLVQKKKLRISHVSA 1352
+L V + ++PV++CDN S ++ NPV+H R KH+EID H VR+ + L++ VS+
Sbjct: 1285 QDLHV-TCTKLPVLFCDNQSALHIAANPVFHERTKHLEIDCHIVREKLHSGILKLLPVSS 1343
Query: 1353 QDQLADVLTK 1362
++Q+AD TK
Sbjct: 1344 KEQVADFFTK 1353
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 411 bits (1056), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/511 (42%), Positives = 307/511 (60%), Gaps = 2/511 (0%)
Query: 868 LPATVEPTRVTQALKLPKWRQAMNVEFDALITNGTWVLVPPAAGQNLVGCKWIFRVKRNP 927
L + EPT +A K W+QAM VE AL GTW LV + C+WI+++K +
Sbjct: 878 LDSHTEPTTYAEASKFDCWKQAMQVELSALENTGTWKLVDLPPNVKPIVCRWIYKIKHHA 937
Query: 928 DGTVAKYKARLVAKGYTQRPGIDFEDTFSPVLKPTTIRVILTMAVSKRWNVYQLDVNNAF 987
DG++ +YKARLVAKGY Q G+D+ DT+SPV K TT+R I+ +A W+++QLDVNNAF
Sbjct: 938 DGSIERYKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRTIIALAYMNNWHIHQLDVNNAF 997
Query: 988 LHGPLSENVYMQQPPGFIDSEKPHYVCKLVKALYGLRQAPRAWYQALRNCAVQFGFVQSK 1047
LHG L E+VYM P G I K + VCKL+K+LYGL+QA R WY+ L + V ++QS
Sbjct: 998 LHGDLQEDVYMIVPQG-ITPSKSNQVCKLIKSLYGLKQASRKWYEKLTSLLVHHHYLQST 1056
Query: 1048 SDHSLFILQRGAKTCFFLVYVDDLLLTGNCNELIHLFISALGSKFSLKDPQKLNFFLGID 1107
SDHSLFI + LVYVDD+++TG + L S +KD +L +FLG++
Sbjct: 1057 SDHSLFIKKTYTSFTALLVYVDDVIITGTSLSEFQDIKAILHSALEIKDLGQLKYFLGLE 1116
Query: 1108 IHTTASGMFMSQHHYIRKLLVAARMEGVKPVSTPFATTTTLLKNVTGKGVNATEYRKLVG 1167
+ ++ G+ + Q Y LL KP STP + L + + YR+L+G
Sbjct: 1117 VAHSSQGISLCQRKYCLDLLTDIGFLAAKPASTPSDPSCKLHADGGPPFSDIPSYRRLIG 1176
Query: 1168 ALQYLTWTRPDICYAVNKLSQFMQSPSSAHWEALKRLLRYLKSTIDYGIKITPQSAFHFH 1227
L YLT TRP I +A +LSQF+ SP+ H+ A R+LRYLK + G+ S+
Sbjct: 1177 RLIYLTNTRPYITFATQQLSQFLNSPTEKHYIAATRILRYLKKSPGQGLFFPRDSSLFLS 1236
Query: 1228 AFSDADWXGDPLDRSSTTGYILYLGNVPISWASRKQKSVARSSTEAEYRAVASTASEVMW 1287
+SDADW G R S +G +LG+ ISW ++KQ +V+RSS+EAEYRA+ + E+ W
Sbjct: 1237 GYSDADWAGCLDSRRSISGQCFFLGHSLISWKTKKQLTVSRSSSEAEYRALGAATCELQW 1296
Query: 1288 VSSLLTELGVLSSVQVPVIYCDNISTTYVCQNPVYHSRMKHIEIDIHFVRDLVQKKKLRI 1347
+ LL +L V ++V++ V+YCDN S ++ NPV+H R KH+EID H VR+ +Q +++
Sbjct: 1297 LLYLLHDLHV-TTVKLHVLYCDNQSALHIAANPVFHERTKHLEIDCHLVREKLQACIMKL 1355
Query: 1348 SHVSAQDQLADVLTKPQAKTVFALNRTKIGV 1378
V++ DQLAD TKP F K+G+
Sbjct: 1356 LPVTSADQLADFFTKPLLPQPFHTLLFKLGM 1386
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 296 bits (759), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 152/352 (43%), Positives = 206/352 (58%), Gaps = 1/352 (0%)
Query: 873 EPTRVTQALKLPKWRQAMNVEFDALITNGTWVLVPPAAGQNLVGCKWIFRVKRNPDGTVA 932
EP +A P W++AM EF AL N TW L + VGC+W+++VK DG+V
Sbjct: 335 EPNSYEEASMDPAWQKAMTQEFLALHDNNTWTLTNLPKDKKSVGCRWVYKVKHKADGSVE 394
Query: 933 KYKARLVAKGYTQRPGIDFEDTFSPVLKPTTIRVILTMAVSKRWNVYQLDVNNAFLHGPL 992
+YKARLV KGYTQ GID+ +TFSPV+K TT+R ++ A K+WN++QLDVNNAFLHG L
Sbjct: 395 RYKARLVVKGYTQHHGIDYTETFSPVVKMTTVRTLIVAAAKKQWNIHQLDVNNAFLHGDL 454
Query: 993 SENVYMQQPPGFIDSEKPHYVCKLVKALYGLRQAPRAWYQALRNCAVQFGFVQSKSDHSL 1052
E VYM PPG K VCKL K+LYGL+QA R WY+ L G+ S D+SL
Sbjct: 455 HEEVYMDIPPGLATPHKD-LVCKLNKSLYGLKQASRQWYEKLTEALHTRGYEHSPHDYSL 513
Query: 1053 FILQRGAKTCFFLVYVDDLLLTGNCNELIHLFISALGSKFSLKDPQKLNFFLGIDIHTTA 1112
F +RGA F VYVDD+LLTG I L ++F +KD +L++FLG+++
Sbjct: 514 FYKKRGASNVFLGVYVDDILLTGTDTNEIDELKRFLDNQFKIKDLGRLHYFLGLEVLYKD 573
Query: 1113 SGMFMSQHHYIRKLLVAARMEGVKPVSTPFATTTTLLKNVTGKGVNATEYRKLVGALQYL 1172
G+ +SQ ++ LL + + P+S+P L + + T YRKL+G L +L
Sbjct: 574 DGILVSQRKFVLDLLKEFNCDHMAPLSSPLDPNIKLRSHEGKVLDDPTYYRKLIGKLNFL 633
Query: 1173 TWTRPDICYAVNKLSQFMQSPSSAHWEALKRLLRYLKSTIDYGIKITPQSAF 1224
T TR D+ Y V LSQ+MQ P H A +LRYLK G+ ++ + F
Sbjct: 634 THTRLDLAYGVQLLSQYMQDPREPHLHAAFHMLRYLKKDPTLGVFMSSAANF 685
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H fold
chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 253 bits (645), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 167/532 (31%), Positives = 245/532 (46%), Gaps = 99/532 (18%)
Query: 850 SQNNIYKPKVLHTVTKHPLPATVEPTRVTQALKLPKWRQAMNVEFDALITNGTWVLVPPA 909
S +NI P ++ H A EP T+A K WRQAM VE AL GTW ++
Sbjct: 271 SYHNISNPHSHFILSLH---AHNEPKTYTEANKFECWRQAMQVELTALENTGTWKIIDSP 327
Query: 910 AGQNLVGCKWIFRVKRNPDGTVAKYKARLVAKGYTQRPGIDFEDTFSPVLKPTTIRVILT 969
+GC+WI+++K N D T+ +YKARL
Sbjct: 328 PNAKPIGCRWIYKIKHNADDTIERYKARL------------------------------- 356
Query: 970 MAVSKRWN-VYQLDVNNAFLHGPLSENVYMQQPPGFIDSEKPHYVCKLVKALYGLRQAPR 1028
V+K +N V LD + D+ P V +R A R
Sbjct: 357 --VAKGYNQVEGLD---------------------YFDTYSP------VAKHTTIRLASR 387
Query: 1029 AWYQALRNCAVQFGFVQSKSDHSLFILQRGAKTCFFLVYVDDLLLTGNCNELIHLFISAL 1088
WY+ L + V G+ Q+ +DHSLFI + LVYVDD++L GN + + L
Sbjct: 388 KWYEKLASLLVNHGYKQASADHSLFIKHSTTQFTALLVYVDDIILAGNSLDEFTFIKNIL 447
Query: 1089 GSKFSLKDPQKLNFFLGIDIHTTASGMFMSQHHYIRKLLVAARMEGVKPVSTPFATTTTL 1148
+ F +KD +L +FLG+++ + G+ + Q Y LL + KPV+TP + L
Sbjct: 448 HNSFKIKDLGQLKYFLGLEVAHSKLGISLCQRKYGLDLLSDTGLLDSKPVATPSDPSIKL 507
Query: 1149 LKNVTGKGVNATEYRKLVGALQYLTWTRPDICYAVNKLSQFMQSPSSAHWEALKRLLRYL 1208
+ + + YR+LVG L YL TRPDI + +LSQF+ P+ H+ A R+LRYL
Sbjct: 508 YHDDSPLYTDIPAYRRLVGRLLYLNATRPDITFITQQLSQFLSKPTQTHYNAALRVLRYL 567
Query: 1209 KSTIDYGIKITPQSAFHFHAFSDADWXGDPLDRSSTTGYILYLGNVPISWASRKQKSVAR 1268
K+ G+ S + +SDADW G R S +G +LG+ ISW ++KQ +V+R
Sbjct: 568 KTCPGKGLHFPRSSLPYIQGYSDADWAGCRDTRRSISGQCFFLGDSLISWRTKKQLTVSR 627
Query: 1269 SSTEAEYRAVASTASEVMWVSSLLTELGVLSSVQVPVIYCDNISTTYVCQNPVYHSRMKH 1328
SS+EAEYRA+ + S NPV+H R KH
Sbjct: 628 SSSEAEYRALGAATS-----------------------------------NPVFHERTKH 652
Query: 1329 IEIDIHFVRDLVQKKKLRISHVSAQDQLADVLTKPQAKTVFALNRTKIGVSD 1380
+EID H VR+ + +++ +S+++QLAD TK F K+G+ D
Sbjct: 653 LEIDCHIVREKLAAGIMKLLPISSKNQLADCFTKSILPQPFNSLLFKLGLVD 704
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 245 bits (626), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 128/294 (43%), Positives = 176/294 (59%), Gaps = 5/294 (1%)
Query: 890 MNVEFDALITNGTWVLV--PPAAGQNLVGCKWIFRVKRNPDGTVAKYKARLVAKGYTQRP 947
M E AL GTW +V PPA +GC+WIF++K N DG++ +YKARLVAKGY Q
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKP--IGCRWIFKIKHNVDGSIERYKARLVAKGYNQIE 58
Query: 948 GIDFEDTFSPVLKPTTIRVILTMAVSKRWNVYQLDVNNAFLHGPLSENVYMQQPPGFIDS 1007
G+D+ DT+SPV K TT+R I+ +A W+++Q DVNNAFLHG L E+VYM PPG S
Sbjct: 59 GLDYFDTYSPVAKLTTVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPGVPHS 118
Query: 1008 EKPHYVCKLVKALYGLRQAPRAWYQALRNCAVQFGFVQSKSDHSLFILQRGAKTCFFLVY 1067
+ VCKL K+LYGL+QA WY+ L N + G+ Q+ SD SLFI + LVY
Sbjct: 119 HQDE-VCKLNKSLYGLQQASMKWYEKLTNILISTGYKQAASDASLFIKHTHSSFTILLVY 177
Query: 1068 VDDLLLTGNCNELIHLFISALGSKFSLKDPQKLNFFLGIDIHTTASGMFMSQHHYIRKLL 1127
VDD++L G+ + L F +KD +L +FLG+++ + SG+ + Q Y LL
Sbjct: 178 VDDVILAGDTLSEFNTIKGVLHDAFKIKDIGQLKYFLGLEVAHSKSGISLCQRKYCLDLL 237
Query: 1128 VAARMEGVKPVSTPFATTTTLLKNVTGKGVNATEYRKLVGALQYLTWTRPDICY 1181
+ + G KP++TP + L + + YR+L+G L YL TRPDI Y
Sbjct: 238 EDSGLTGSKPMNTPSDPSIKLHNDSAPSFPDIPAYRRLIGRLLYLNTTRPDITY 291
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 217 bits (553), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/314 (37%), Positives = 176/314 (56%), Gaps = 15/314 (4%)
Query: 1065 LVYVDDLLLTGNCNELIHLFISALGSKFSLKDPQKLNFFLGIDIHTTASGMFMSQHHYIR 1124
L+YVDDL++ GN + I F L F +KD L +FLG+++ A+G+FM Q Y
Sbjct: 4 LIYVDDLVIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGLFMCQRKYTL 63
Query: 1125 KLLVAARMEGVKPVSTPFATTTTLLKNVTGKGVNATEYRKLVGALQYLTWTRPDICYAVN 1184
+L +M KP + P L+ + + + YR+L+ L YLT P+I Y+V+
Sbjct: 64 DILDECKMLDCKPSTFPMEQNQKLVLDKGPTCSDPSRYRRLISRLIYLTIMHPEITYSVH 123
Query: 1185 KLSQFMQSPSSAHWEALKRLLRYLKSTIDYGIKITPQSAFHFHAFSDADWXGDPLDRSST 1244
L+ R+LRYLKS+ GI + ++ A+ D+DW PL R ST
Sbjct: 124 ILTM--------------RVLRYLKSSPGQGIILPKENDLQLVAYCDSDWASCPLTRRST 169
Query: 1245 TGYILYLGNVPISWASRKQKSVARSSTEAEYRAVASTASEVMWVSSLLTELGVLSSVQVP 1304
+GY++ LG+ PISW ++KQ +V++SS+EAEYRA+ SEV+W+ SLL+ L V
Sbjct: 170 SGYLMKLGSAPISWKTKKQSTVSKSSSEAEYRAMGQAVSEVIWLRSLLSSLQVHYDSPT- 228
Query: 1305 VIYCDNISTTYVCQNPVYHSRMKHIEIDIHFVRDLVQKKKLRISHVSAQDQLADVLTKPQ 1364
V+ CDN + ++ NPVYH R KHIE+D HF+R +Q+ + S+V + Q AD+ TK
Sbjct: 229 VLLCDNQAAMHLAANPVYHERTKHIEVDCHFIRTHLQEGTISTSYVPTKKQQADIFTKAL 288
Query: 1365 AKTVFALNRTKIGV 1378
F K+GV
Sbjct: 289 GAKQFQELTFKLGV 302
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 179 bits (454), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 97/259 (37%), Positives = 142/259 (54%), Gaps = 1/259 (0%)
Query: 1052 LFILQRGAKTCFFLVYVDDLLLTGNCNELIHLFISALGSKFSLKDPQKLNFFLGIDIHTT 1111
+F + LVYVDD++L GN S L S F +KD +L + LG+++ +
Sbjct: 1 MFTKHTDSSFTILLVYVDDIILAGNSLSEFQHIKSILHSSFKIKDLGQLKYVLGLEVAHS 60
Query: 1112 ASGMFMSQHHYIRKLLVAARMEGVKPVSTPFATTTTLLKNVTGKGVNATEYRKLVGALQY 1171
G+ + Q Y LL + KPVST + L + + + YR+L+G L Y
Sbjct: 61 KQGISLCQRKYCLDLLSDSGTINSKPVSTSSDASLKLHNDSSPPYEDIPSYRRLIGRLLY 120
Query: 1172 LTWTRPDICYAVNKLSQFMQSPSSAHWEALKRLLRYLKSTIDYGIKITPQSAFHFHAFSD 1231
L TRPDI + +LSQF+ P+ H A R+L+YLK G+ S+ H FSD
Sbjct: 121 LNSTRPDITFITQQLSQFLSKPTQTHHNAALRVLKYLKCCPGKGLFFPRNSSLHLQGFSD 180
Query: 1232 ADWXGDPLDRSSTTGYILYLGNVPISWASRKQKSVARSSTEAEYRAVASTASEVMWVSSL 1291
DW G R S +G ++GN ISW ++KQ +V+RSS+EAEYRA+AS E+ W+ L
Sbjct: 181 VDWAGCVDSRRSISGQCFFIGNSLISWRTKKQTTVSRSSSEAEYRALASATCELQWILYL 240
Query: 1292 LTELGVLSSVQVPVIYCDN 1310
L +L + SS ++PV++CDN
Sbjct: 241 LKDLNIQSS-KLPVLFCDN 258
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 177 bits (449), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 139/475 (29%), Positives = 197/475 (41%), Gaps = 127/475 (26%)
Query: 870 ATVEPTRVTQALKLPKWRQAMNVEFDALITNGTWVLVPPAAGQNLVGCKWIFRVKRNPDG 929
+ +EP+ QA P+W+ AM+ E AL GTW+ V P + +G KWIFR+
Sbjct: 149 SDIEPSSFKQAQSDPRWQLAMSPELSALEATGTWIFVDPPPNISPIGSKWIFRLN----- 203
Query: 930 TVAKYKARLVAKGYTQRPGIDFEDTFSPVLKPTTIRVILTMAVSKRWNVYQLDVNNAFLH 989
D +TF LH
Sbjct: 204 --------------------DANNTF--------------------------------LH 211
Query: 990 GPLSENVYMQQPPGFIDSEKPHYVCKLVKALYGLRQAPRAWYQALRNCAVQFGFVQSKSD 1049
G L E+VYM P G + +P VCKL+K+LYGL+QA R W++ L + + GFVQ+ +D
Sbjct: 212 GDLQEDVYMHPPQG-VSPPRPGQVCKLLKSLYGLKQASRRWFEKLISLLLTIGFVQASAD 270
Query: 1050 HSLFILQRGAKTCF--FLVYVDDLLLTGNCNELIHLFISALGSKFSLKDPQKLNFFLGID 1107
HS I R + T F L+YV A SK
Sbjct: 271 HSFLI--RASPTSFTALLIYV------------------AHSSK---------------- 294
Query: 1108 IHTTASGMFMSQHHYIRKLLVAARMEGVKPVSTPFATTTTLLKNVTGKGVNATEYRKLVG 1167
G+ + Q Y LL A + K VSTP L + + YR L+G
Sbjct: 295 ------GISLCQRKYCLDLLSDAGLTTCKSVSTPLDYACLLHIDDGPPFDDVLAYRCLIG 348
Query: 1168 ALQYLTWTRPDICYAVNKLSQFMQSPSSAHWEALKRLLRYLKSTIDYGIKITPQSAFHFH 1227
L YLT TRPDI +A +LSQFM PS H +LRYL+ G+ S
Sbjct: 349 CLLYLTTTRPDISFATQQLSQFMAKPSVNHHRTALCVLRYLQVCPGRGLFFPRTSEMQLL 408
Query: 1228 AFSDADWXGDPLDRSSTTGYILYLGNVPISWASRKQKSVARSSTEAEYRAVASTASEVMW 1287
FSDADW G ++S+A EA +R + S +
Sbjct: 409 GFSDADWGG----------------------CVDSRRSLAFQ--EAIHRFLFFLRSGISC 444
Query: 1288 VSSLLTELGVLSSVQVPVIYCDNISTTYVCQNPVYHSRMKHIEIDIHFVRDLVQK 1342
S+ ++ +++ ++YCDN S ++ NPV++ R KH++ID H VR+ VQ+
Sbjct: 445 F-SISHPRTPMAHIRLSILYCDNQSALHIAANPVFYERTKHLDIDCHIVREKVQR 498
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 128/452 (28%), Positives = 202/452 (44%), Gaps = 103/452 (22%)
Query: 900 NGTWVLVPPAAGQNLVGCKWIFRVKRNPDGTVAKYKARLVAKGYTQRPGIDFEDTFSPVL 959
N TW L+ G+ + KW+F++K NP+G + K+KARLVA
Sbjct: 210 NQTWELIKLTDGKKAIDVKWVFKLKLNPEGKIVKHKARLVA------------------- 250
Query: 960 KPTTIRVILTMAVSKRWNVYQLDVNNAFLHGPLSENVYMQQPPGFIDSEKPHYVCKLVKA 1019
RV L + GF +E V KL KA
Sbjct: 251 -----RVFL-------------------------------KKEGFDYTE---VVFKLNKA 271
Query: 1020 LYGLRQAPRAWYQALRNCAVQFGFVQSKSDHSLFILQRGAKTCFFLVYVDDLLLTGNCNE 1079
LYGL+QAPRAW + + V+ GF + ++H +++ +G++ L+
Sbjct: 272 LYGLKQAPRAWNKRIEKFFVEQGFKKCLAEHGVYV--KGSEGTSLLI------------- 316
Query: 1080 LIHLFISALGSKFSLKDPQKLNFFLGIDIHTTASGMFMSQHHYIRKLLVAARM-EGVKPV 1138
+ ++I T G+ ++Q Y ++ M + +
Sbjct: 317 ------------------------ICLEILRTTKGLILNQTKYDTEIQKKFNMLDFNSSI 352
Query: 1139 STPFATTTTLLKNVTGKGVNATEYRKLVGALQYLTWTRPDICYAVNKLSQFMQSPSSAHW 1198
+ +A +K KGV+ T R+L+G L+YL +R DI Y+V +S+FM +P H+
Sbjct: 353 TLAYANNINEVKE-EDKGVDPTILRRLIGLLRYLCQSRLDISYSVGIVSKFMSNPLKTHF 411
Query: 1199 EALKRLLRYLKSTIDYGI---KITPQSAFHFHAFSDADWXGDPLDRSSTTGYILYLGNVP 1255
A K+++RY+ T+ YGI + +SDADW D DR TT ++ L P
Sbjct: 412 LAAKKIIRYIHGTLQYGILFPEAQETEQLSMIDYSDADWCRDKRDRRRTTSFLFMLQGAP 471
Query: 1256 ISWASRKQKSVARSSTEAEYRAVASTASEVMWVSSLLTELGVLSSVQVPVIYCDNISTTY 1315
ISW+S+KQ VA SS E EY +S A + W+ ++L E ++ Q + DN
Sbjct: 472 ISWSSKKQPIVALSSCEVEYVVGSSAACQANWLQNVL-EQSMIKLKQPIKLLIDNKYAIN 530
Query: 1316 VCQNPVYHSRMKHIEIDIHFVRDLVQKKKLRI 1347
+ +N + H + KHIE H++RD V K K+ I
Sbjct: 531 LAKNHISHGKSKHIETKFHYLRDQVNKCKINI 562
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 164 bits (415), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 75/143 (52%), Positives = 98/143 (68%), Gaps = 1/143 (0%)
Query: 868 LPATVEPTRVTQALKLPKWRQAMNVEFDALITNGTWVLVPPAAGQNLVGCKWIFRVKRNP 927
L A EP T+A K WRQAM VE AL GTW ++ + +GC+WI++VK +
Sbjct: 906 LHAHTEPKSYTEANKFECWRQAMQVELTALENTGTWKIIDLPSNAKPIGCRWIYKVKHHA 965
Query: 928 DGTVAKYKARLVAKGYTQRPGIDFEDTFSPVLKPTTIRVILTMAVSKRWNVYQLDVNNAF 987
DGT+ +YKARLVAKGY Q G+D+ DT+SPV K TTIR++L +A W+++QLDVNNAF
Sbjct: 966 DGTIERYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRLVLALASLNNWHLHQLDVNNAF 1025
Query: 988 LHGPLSENVYMQQPPGFIDSEKP 1010
LHG L E+VYM PPG + + KP
Sbjct: 1026 LHGDLQEDVYMDIPPG-VSTNKP 1047
>IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
27872933-27871392 E EGN_Mt090430 20090702
Length = 256
Score = 137 bits (345), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 151/324 (46%), Gaps = 71/324 (21%)
Query: 1064 FLVYVDDLLLTGNCNELIHLFISALGSKFSLKDPQKLNFFLGIDIHTTASG-MFMSQHHY 1122
+VYV D+++TGN L+ +S L S FSLKD L +FLGI++ ++G + ++Q Y
Sbjct: 1 MIVYVGDMIVTGNNTPLLQQLVSHLNSAFSLKDLGALKYFLGIEVKPQSNGSLLITQSKY 60
Query: 1123 IRKLLVAARMEGVKPVSTPFATTTTLLKNVTGKGVNATEYRKLVGALQYLTWTRPDICYA 1182
+R LL M+ K + +P + L K+ + + T R +V ALQY P
Sbjct: 61 VRDLLAKTDMQEAKSLPSPMISDLKLSKDGSTPFSDPTLCRSIVRALQYANLIGP----- 115
Query: 1183 VNKLSQFMQSPSSAHWEALKRLLRYLKSTIDYGIKITPQSAFHFH--AFSDADWXGDPLD 1240
L +LR+LK T+ +G+ + P + A+ DADW DP D
Sbjct: 116 ------------------LSNVLRHLKGTLSWGLLVRPIPTYPLSILAYCDADWGSDPDD 157
Query: 1241 RSSTTGYILYLGNVPISWASRKQKSVARSSTEAEYRAVASTASEVMWVSSLLTELGVLSS 1300
RS ++LG ISW ++KQ +ARSSTEAEY ++A SE++W+ +
Sbjct: 158 RS--VDACVFLGPNLISWWAKKQAVIARSSTEAEYSSLALAKSELLWIKT---------- 205
Query: 1301 VQVPVIYCDNISTTYVCQNPVYHSRMKHIEIDIHFVRDLVQKKKLRISHVSAQDQLADVL 1360
Y +R+K I+ KKL +S+V Q ++ D++
Sbjct: 206 ---------------------YGARLKVIQ------------KKLFVSNVPGQVKVVDIM 232
Query: 1361 TKPQAKTVFALNRTKIGVSDGSTI 1384
TK T F RTK+ V T+
Sbjct: 233 TKALPPTRFEGLRTKLTVCCSPTV 256
>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
EGN_Mt090430 20090702
Length = 149
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 80/150 (53%), Gaps = 29/150 (19%)
Query: 890 MNVEFDALITNGTWVLVPPAAGQNLVGCKWIFRVKRNPDGTVAKYKARLVAKGYTQRPGI 949
M E AL GTW LV +GC+WI+++K DG++ +YKARLV KGY Q G
Sbjct: 1 MQAEITALENTGTWKLVDLPPNVKPIGCRWIYKIKHYADGSIQRYKARLVVKGYNQVEGW 60
Query: 950 DFEDTFSP----------------------------VLKPTTIRVILTMAVSKRWNVYQL 981
D+ DT+SP V K TT+R ++ +A +W++++L
Sbjct: 61 DYFDTYSPVAKLTTARLVVKGYNQVEGWDYFDTYSLVAKMTTVRTVIALASINQWHIHKL 120
Query: 982 DVNNAFLHGPLSENVYMQQPPGFIDSEKPH 1011
D N+AFLHG L E+VYM P G I + KP+
Sbjct: 121 DANSAFLHGDLQEDVYMLIPQG-ITTSKPN 149
>IMGA|Medtr8g044880.1 polyprotein-like, putative
chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
EGN_Mt090430 20090702
Length = 196
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 94/179 (52%), Gaps = 18/179 (10%)
Query: 1203 RLLRYLKSTIDYGIKITPQSAFHFHAFSDADWX-GDPLDRSSTTGYILYLGNVPISWASR 1261
R+L YLK G+ QS+ +++ADW G R S + + W
Sbjct: 2 RVLSYLKGCPGKGLFFPRQSSLQIQGYTNADWAVGCKDTRRSISEQCFF------CW--- 52
Query: 1262 KQKSVARSSTEAEYRAVASTASEVMWVSSLLTELGVLSSVQVPVIYCDNISTTYVCQNPV 1321
SS+EAEYRA+AS E+ ++ LL +L V + ++ PV+YCDN S Y+ NPV
Sbjct: 53 -------SSSEAEYRALASATCELQRLTYLLRDLKV-NCIKPPVLYCDNQSAIYIAANPV 104
Query: 1322 YHSRMKHIEIDIHFVRDLVQKKKLRISHVSAQDQLADVLTKPQAKTVFALNRTKIGVSD 1380
+H KH+EID H VR+ +Q ++ +S++DQ+AD TK F +K+G+ D
Sbjct: 105 FHECTKHLEIDCHIVREKLQAGLFKLLPISSKDQVADFFTKSLLPQPFNPLLSKLGMLD 163
>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr05_pseudomolecule_IMGAG_V3
36507044-36505941 H EGN_Mt090430 20090702
Length = 367
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 75/117 (64%), Gaps = 3/117 (2%)
Query: 1265 SVARSSTEAEYRAVASTASEVMWVSSLLTELGVLSSVQVP-VIYCDNISTTYVCQNPVYH 1323
+V++SS+EAEYRA+A+T E+ W++ LL + + P ++YCD+ S ++ N +H
Sbjct: 248 TVSKSSSEAEYRAMATTVCEIQWLTYLLQDFNL--QFHTPALLYCDSQSARHIAANTSFH 305
Query: 1324 SRMKHIEIDIHFVRDLVQKKKLRISHVSAQDQLADVLTKPQAKTVFALNRTKIGVSD 1380
R KHIE+D H VR+ +Q+K + VS+ QLADVLTKP F+ +K+G+ D
Sbjct: 306 ERTKHIELDCHIVREKLQQKLFHLLPVSSSQQLADVLTKPLDPLPFSNFISKLGLKD 362
>IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33354025-33354392 H EGN_Mt090430 20090702
Length = 108
Score = 88.6 bits (218), Expect = 2e-17, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 62/102 (60%)
Query: 1016 LVKALYGLRQAPRAWYQALRNCAVQFGFVQSKSDHSLFILQRGAKTCFFLVYVDDLLLTG 1075
L K+LYGL+QA R WY L +++GF +S +DHSLF R + L+YVDDL++ G
Sbjct: 5 LRKSLYGLKQASRNWYSKLSQALIEYGFQESHADHSLFTYSRESIFMAVLIYVDDLVIAG 64
Query: 1076 NCNELIHLFISALGSKFSLKDPQKLNFFLGIDIHTTASGMFM 1117
N + I F L F +KD L +FLG+++ A+G+FM
Sbjct: 65 NDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGLFM 106
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 850 SQNNIYKPKVLHTVTKHPLPATVEPTRVTQALKLPKWRQAMNVEFDALITNGTWVLVPPA 909
S +NI P ++ H A EP T+A K WRQAM VE AL GTW ++
Sbjct: 364 SYHNISNPHSHFILSLH---AHNEPKTYTEANKFECWRQAMQVELTALENTGTWKIIDSP 420
Query: 910 AGQNLVGCKWIFRVKRNPDGTVAKYKARLVAKGYTQ 945
+GC+WI+++K + DGT+ +YKARLVAKGY Q
Sbjct: 421 PNAKPIGCRWIYKIKHHADGTIERYKARLVAKGYNQ 456
>IMGA|Medtr8g012170.1 polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 1857213-1857446 H
EGN_Mt090430 20090702
Length = 77
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 54/77 (70%)
Query: 998 MQQPPGFIDSEKPHYVCKLVKALYGLRQAPRAWYQALRNCAVQFGFVQSKSDHSLFILQR 1057
M QP GF+ + P+ VCKL K+LYGL+QAP+AW+QAL+ + + F +KSD SLFI +
Sbjct: 1 MSQPYGFVHPQHPNQVCKLRKSLYGLKQAPQAWFQALQKFLLGYNFQNAKSDTSLFIYVK 60
Query: 1058 GAKTCFFLVYVDDLLLT 1074
+FLVYVDD+ LT
Sbjct: 61 ANTFAYFLVYVDDIPLT 77
>IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
24473881-24473486 H EGN_Mt090430 20090702
Length = 131
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Query: 1106 IDIHTTASGMFMSQHHYIRKLLVAARMEGVKPVSTPFATTTTLLKNVTGKGVNATEYRKL 1165
++I + G+ + Q Y ++L M T +GV+ T +R+L
Sbjct: 1 MEILINSKGLILHQTDYASEILKKFNMLDCNSTITHADANIIYEVKEEDEGVDPTMFRRL 60
Query: 1166 VGALQYLTWTRPDICYAVNKLSQFMQSPSSAHWEALKRLLRYLKSTIDYGI---KITPQS 1222
+G+L+YL +RP I Y V +S+FM +P ++ + K++LRY+ ST+ YGI +
Sbjct: 61 IGSLRYLCQSRPGISYLVGIVSRFMSNPLKTNFLSAKKILRYINSTLQYGILFLVVQATE 120
Query: 1223 AFHFHAFSDAD 1233
+SDAD
Sbjct: 121 QLDMEGYSDAD 131
>IMGA|Medtr1g102700.1 hypothetical protein
chr01_pseudomolecule_IMGAG_V3 21129202-21129726 H
EGN_Mt090430 20090702
Length = 135
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 1132 MEGVKPVSTPFATTTTLLKNVTGKGVNATEYRKLVGALQYLTWTRPDICYAVNKLSQFMQ 1191
M P T T+ +L+ + V+ T++R L+G L+YL TRPD+ ++ LSQFMQ
Sbjct: 1 MGNCNPTLTQVVTSLSLINEQRKENVDFTQFRMLIGCLRYLCNTRPDLALSIGLLSQFMQ 60
Query: 1192 SPSSAHWEALKRLLRYLKSTIDYGI 1216
+ +H A+KR+L Y+K +++ I
Sbjct: 61 NLGVSHMIAVKRMLIYIKGKVEHAI 85
>IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG_V3
9341518-9340611 H EGN_Mt090430 20090702
Length = 155
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 49/178 (27%)
Query: 1148 LLKNVTGKGVNATEYRKLVGALQYLTWTRPDICYAVNKLSQFMQSPSSAHWEALKRLLRY 1207
L ++ + +NAT YR+++G L+Y+ RP I + V +
Sbjct: 26 LSEDTNDEPMNATIYRQIIGPLRYMCNKRPYIAHGVGLVK-------------------- 65
Query: 1208 LKSTIDYGIKITPQSAFHFHAFSDADWXGDPLDRSSTTGYILYLGNVPISWASRKQKSVA 1267
GD D+ STT Y+ +G PISW+S+KQ VA
Sbjct: 66 ----------------------------GDQDDKKSTTCYLFMIGAAPISWSSKKQGIVA 97
Query: 1268 RSSTEAEYRAVASTASEVMWVSSLLTELGVLSSVQVPVIYCDNISTTYVCQNPVYHSR 1325
SS+EA+Y A + A + +W+ LL EL ++ ++ DN + P+ H +
Sbjct: 98 LSSSEAKYVATSYAACQALWIEMLLEELNAFEVDRIKLL-VDNKLAIDLADRPISHGK 154
>IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein,
chr08_pseudomolecule_IMGAG_V3 22106944-22106630 H
EGN_Mt090430 20090702
Length = 104
Score = 66.6 bits (161), Expect = 9e-11, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 56/93 (60%)
Query: 890 MNVEFDALITNGTWVLVPPAAGQNLVGCKWIFRVKRNPDGTVAKYKARLVAKGYTQRPGI 949
M + A+ T W L + + ++GCKW +R+K +GT+ ++K L+ K YT++ G+
Sbjct: 1 MTNKLRAITTKNAWSLTALSKDKVVIGCKWEYRIKHKVNGTIERFKTFLMVKDYTRQEGV 60
Query: 950 DFEDTFSPVLKPTTIRVILTMAVSKRWNVYQLD 982
+ DTFS V K T + ++L++ V+K + QLD
Sbjct: 61 NSLDTFSLVAKITIVCLLLSIVVAKGRILQQLD 93
>IMGA|Medtr4g045170.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 10725937-10725201 H
EGN_Mt090430 20090702
Length = 197
Score = 66.2 bits (160), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 1293 TELGVLSSVQVPV---IYCDNISTTYVCQNPVYHSRMKHIEIDIHFVRDLVQKKKLRISH 1349
T+ G L QV + + DNIST + +NP+ H R KHIE+ H++R+ V K KL++ H
Sbjct: 102 TQYGRLIGSQVFIAVTLKIDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEH 161
Query: 1350 VSAQDQLADVLTKPQAKTVFALNRTKIGV 1378
+++Q+ADVLTK VF R + +
Sbjct: 162 SKSENQIADVLTKGVKIEVFTKPRDSMEI 190
>IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr04_pseudomolecule_IMGAG_V3
10571280-10570869 H EGN_Mt090430 20090702
Length = 106
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 1309 DNISTTYVCQNPVYHSRMKHIEIDIHFVRDLVQKKKLRISHVSAQDQLADVLTKPQAKTV 1368
DNIST + +NP+ H R KHIE+ H++R+ V K KL++ H +++Q+ADVLTK V
Sbjct: 30 DNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTKGVKIEV 89
Query: 1369 FALNRTKIGV 1378
F R + +
Sbjct: 90 FTKPRDSMEI 99
>IMGA|Medtr3g162300.1 retrotransposon like protein, putative
chr03_pseudomolecule_IMGAG_V3 42355834-42354953 H
EGN_Mt090430 20090702
Length = 58
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/43 (65%), Positives = 34/43 (79%)
Query: 1234 WXGDPLDRSSTTGYILYLGNVPISWASRKQKSVARSSTEAEYR 1276
W G PL R STT Y ++LG+ ISWAS+KQ +V+RSSTEAEYR
Sbjct: 8 WAGCPLTRRSTTDYCIFLGSNCISWASKKQPTVSRSSTEAEYR 50
>IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger,
CCHC-type; Retrotransposon gag protein, putative
chr04_pseudomolecule_IMGAG_V3 5913545-5913860 H
EGN_Mt090430 20090702
Length = 84
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 1276 RAVASTASEVMWVSSLLTELGVLSSVQVPVIYCDNISTTYVCQNPVYHSRMKHIEIDIHF 1335
+A+A SE W+ L + + S + +IYCDN S+ ++ NPV+H R KHIEID H
Sbjct: 2 QALAQATSEGKWILYFLDDFPIPHSSPI-IIYCDNNSSMHIVANPVFHERTKHIEIDCHV 60
Query: 1336 VRDLVQKK 1343
VRD ++ +
Sbjct: 61 VRDKIKHE 68
>IMGA|Medtr8g043360.1 Copia protein, related
chr08_pseudomolecule_IMGAG_V3 9348610-9348290 H
EGN_Mt090430 20090702
Length = 106
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 1284 EVMWVSSLLTELGVLSSVQVPVIYCDNISTTYVCQNPVYHSRMKHIEIDIHFVRDLVQKK 1343
+ +W+ L EL ++ ++ DN ST + +P+ H KHIE HF+RD V K
Sbjct: 6 QALWIEMLSEELNAFEVDRIKLL-VDNKSTIDLADHPISHGISKHIERKFHFLRDQVNKM 64
Query: 1344 KLRISHVSAQDQLADVLTKPQAKTVF 1369
KL + + + + QLA++ TKP K +F
Sbjct: 65 KLDLEYCNTEVQLANIFTKPLKKAMF 90
>IMGA|Medtr5g049090.1 Polynucleotidyl transferase, Ribonuclease H
fold, putative chr05_pseudomolecule_IMGAG_V3
20905948-20906136 H EGN_Mt090430 20090702
Length = 62
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 1323 HSRMKHIEIDIHFVRDLVQKKKLRISHVSAQDQLADVLTKPQAKTVFALNRTKIGVSDGS 1382
H R KHI + HF RDL Q + + H ++QDQL D++TKP F R K+GV D S
Sbjct: 2 HGRCKHINVRFHFFRDLPQDGVMELKHCNSQDQLVDIMTKPLKLETFCKLRAKLGVLDRS 61
>IMGA|Medtr3g097190.1 copia-type polyprotein, putative
chr03_pseudomolecule_IMGAG_V3 23165389-23165052 H
EGN_Mt090430 20090702
Length = 85
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 1226 FHAFSDADWXGDPLDRSSTTGYILYLGNVPISWASRKQKSVARSSTEAEYRAVASTASEV 1285
+SD+D GD +DR ST+G + + ISW +++Q A SS EAEY A A +
Sbjct: 13 LEGYSDSDRCGDRMDRRSTSGCLFKFNDAAISWCTKRQPITALSSCEAEYIAGTFAACQA 72
Query: 1286 MWVSSLLTEL 1295
+W+ +++ EL
Sbjct: 73 IWLDNVIKEL 82
>IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33353678-33353912 H EGN_Mt090430 20090702
Length = 57
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 21/71 (29%)
Query: 881 LKLPKWRQAMNVEFDALITNGTWVLVPPAAGQNLVGCKWIFRVKRNPDGTVAKYKARLVA 940
+K P+W++AM +VGC+W++++K G + KYKARLVA
Sbjct: 1 MKKPEWQKAM---------------------AKIVGCRWVYKIKYKASGEIEKYKARLVA 39
Query: 941 KGYTQRPGIDF 951
KGYTQ G DF
Sbjct: 40 KGYTQVEGEDF 50
>IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 2876704-2878630 E
EGN_Mt090430 20090702
Length = 64
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 981 LDVNNAFLHGPLSENVYMQQPPGFIDSEKPHYVCKLVKALYGLRQAPRAWY 1031
+DV+NAFLHG L E+VYM+ P GF S VCKL K+ Y L+ AP+ W+
Sbjct: 1 MDVHNAFLHGDLQEDVYMKLPRGFHTSS-SRLVCKLRKSQYVLKHAPQCWF 50
>IMGA|Medtr3g148550.1 Cyclin-like F-box; F-box protein interaction
domain chr03_pseudomolecule_IMGAG_V3 38683285-38681571 E
EGN_Mt090430 20090702
Length = 455
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 36/46 (78%)
Query: 928 DGTVAKYKARLVAKGYTQRPGIDFEDTFSPVLKPTTIRVILTMAVS 973
DG++ KYKARL+AK Q+ GIDF +T SP++KPTTI V+LT +S
Sbjct: 410 DGSIYKYKARLLAKVLHQQGGIDFSETLSPLVKPTTICVVLTTPLS 455
>IMGA|Medtr4g104330.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 22711685-22712637 H
EGN_Mt090430 20090702
Length = 196
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 68/180 (37%), Gaps = 60/180 (33%)
Query: 1068 VDDLLLTGNCNELIHLFISALGSKFSLKDPQKLNFFLGIDIHTTASGMFMSQHHYIRKLL 1127
+DDL++TG+ I F + S+F + D KL +FL
Sbjct: 1 MDDLMVTGSNKAEIEEFKLRMKSEFEMTDLGKLAYFL----------------------- 37
Query: 1128 VAARMEGVKPVSTPFATTTTLLKNVTGKGVNATEYRKLVGALQYLTWTRPDICYAVNKLS 1187
G+K + T R LV + + DIC+A+ S
Sbjct: 38 ------GIKFMETS---------------------RALV-----MHQEKLDICFAIGLAS 65
Query: 1188 QFMQSPSSAHWEALKRLLRYLKSTIDYGIKITPQS----AFHFHAFSDADWXGDPLDRSS 1243
+FM P H+ K +LRY+K I YGI + P S F D DW GD ++R
Sbjct: 66 RFMSKPMKTHFLVAKCILRYIKGKIQYGI-LFPISQMTEKLELEGFLDDDWYGDEVEREG 124
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 1319 NPVYHSRMKHIEIDIHFVRDLVQKKKLRISHVSAQDQLADVLTKPQAKTVFALNR 1373
NP++H + K IE +HF+ D V K L + + QDQLAD++T + + VF + +
Sbjct: 135 NPIFHGKSKRIETRLHFLSDQVNKNTLSVEYCPTQDQLADLVTSYEERPVFEVKK 189
>IMGA|Medtr7g135120.1 Copia protein, related
chr07_pseudomolecule_IMGAG_V3 32083970-32083668 H
EGN_Mt090430 20090702
Length = 100
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 1292 LTELGVLSSVQVPVIYCDNISTTYVCQNPVYHSRMKHIEIDIHFVRDLVQKKKLRISHVS 1351
+ EL + V V + DN S + +N ++H + KH+E HF+RD V K +L + +
Sbjct: 1 MIELKIGDEVAVK-LKSDNKSAINLAKNSIFHGKRKHVETRFHFMRDQVNKNELIVEYCP 59
Query: 1352 AQDQLADVLTKPQAKTVFALNRTKIGV 1378
QDQL D+ TK + F R +I V
Sbjct: 60 TQDQLTDLFTKALKRDQFLKLRREIRV 86