Jatropha Genome Database

JcCB0119211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0119211.10 + phase: 0 /TE/partial
         (517 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H...    59   5e-09
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy...    58   1e-08
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H...    58   1e-08
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f...    56   3e-08
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H...    52   5e-07

>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
            chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
            EGN_Mt090430 20090702
          Length = 1275

 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 13/188 (6%)

Query: 328  GKEDCVCKLKKSLYGLKQALRXWYKKFESVMGEQGYRKTTSDHCVFYEEI--LYXXLPYF 385
             K   VCKLKKSLYGLKQA R WY+K  SV+ +Q Y + +SDH +F ++    +  L  +
Sbjct: 872  AKPHQVCKLKKSLYGLKQASRQWYEKLTSVLIQQHYIQASSDHSLFIKKSSDSFTILLVY 931

Query: 386  CSMWLIVGQK--SSKSLRERLGTS-KADSWHEDRRAKKLWLSHEKYIEKVLQR-----FR 437
                ++ G      ++++  L TS K     + +    + ++H K    + QR       
Sbjct: 932  VDDIILAGTSLLEFQNIKSILDTSFKIKDLGQLKYFLGIEVAHSKLGISLYQRKYCLDLL 991

Query: 438  MENAKAVSCPLTNHFKLSSKQYPSTDREKEEMEKIPYASAVGSLMYAMICTRPDITHSVG 497
             ++    S P++     S+K +  T    +++    Y   VG L+Y +  TRPDIT    
Sbjct: 992  HDSGHIGSKPISTPSDPSTKLHHDTSTPYDDIPA--YRRLVGRLLY-LNNTRPDITFITQ 1048

Query: 498  VVSRLLLN 505
             +S+ L N
Sbjct: 1049 QLSQFLSN 1056


>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
            transferase, Ribonuclease H fold
            chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
            EGN_Mt090430 20090702
          Length = 1413

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 90/211 (42%), Gaps = 35/211 (16%)

Query: 328  GKEDCVCKLKKSLYGLKQALRXWYKKFESVMGEQGYRKTTSDHCVFYEEIL--YXXLPYF 385
             K + VCKL KSLYGLKQA R WY+K  S++    Y ++TSDH +F ++    +  L  +
Sbjct: 1017 SKSNQVCKLIKSLYGLKQASRKWYEKLTSLLVHHHYLQSTSDHSLFIKKTYTSFTALLVY 1076

Query: 386  CSMWLIVGQKSSK------------------SLRERLGTSKADSWHEDRRAKKLWLSHEK 427
                +I G   S+                   L+  LG   A S      ++ + L   K
Sbjct: 1077 VDDVIITGTSLSEFQDIKAILHSALEIKDLGQLKYFLGLEVAHS------SQGISLCQRK 1130

Query: 428  YIEKVLQRFRMENAKAVSCPLTNHFKLSSKQYPSTDREKEEMEKIP-YASAVGSLMYAMI 486
            Y   +L       AK  S P     KL +   P           IP Y   +G L+Y + 
Sbjct: 1131 YCLDLLTDIGFLAAKPASTPSDPSCKLHADGGP-------PFSDIPSYRRLIGRLIY-LT 1182

Query: 487  CTRPDITHSVGVVSRLLLNSGKEYWTAVKWI 517
             TRP IT +   +S+ L +  ++++ A   I
Sbjct: 1183 NTRPYITFATQQLSQFLNSPTEKHYIAATRI 1213


>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
            chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
            EGN_Mt090430 20090702
          Length = 1414

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 90/204 (44%), Gaps = 23/204 (11%)

Query: 326  KRGKEDCVCKLKKSLYGLKQALRXWYKKFESVMGEQGYRKTTSDHCVFYEE--ILYXXLP 383
            K  K + VCKL KSLYGLKQA R WY+K  SV+ +Q Y + TSD+ +F ++    +  L 
Sbjct: 1024 KSSKLNQVCKLTKSLYGLKQASRKWYEKLTSVLFDQHYTQATSDYSLFVKKTSTSFTVLL 1083

Query: 384  YFCSMWLIVGQKSS-----KSLRER------LGTSKADSWHEDRRAK-KLWLSHEKYIEK 431
             +    ++ G   S     KS+ +       LG  K     E   +K  + L   KY   
Sbjct: 1084 VYVDDIILAGNSISEFSHIKSILDSLFKIKDLGQLKYFLGIEVAHSKLGISLCQRKYCLD 1143

Query: 432  VLQRFRMENAKAVSCPLTNHFKLSSKQYPSTDREKEEMEKIPYA-SAVGSLMYAMICTRP 490
            +L       +K +S P  +  KL               E +P     VG L+Y +  TRP
Sbjct: 1144 LLADIGSLGSKPISTPSDSSIKLHLD-------SSSPFEDVPACRRLVGRLLY-LNNTRP 1195

Query: 491  DITHSVGVVSRLLLNSGKEYWTAV 514
            DIT     +S+ L    + + +A 
Sbjct: 1196 DITFITQQLSQFLSQPTQAHHSAA 1219


>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
           CU179634.6 87152-89450 H EGN_Mt090430 20090702
          Length = 688

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 90/202 (44%), Gaps = 27/202 (13%)

Query: 330 EDCVCKLKKSLYGLKQALRXWYKKFESVMGEQGYRKTTSDHCVFYEE-----ILYXXLPY 384
           +D VCKL KSLYGLKQA R WY+K    +  +GY  +  D+ +FY++     +    L  
Sbjct: 471 KDLVCKLNKSLYGLKQASRQWYEKLTEALHTRGYEHSPHDYSLFYKKRGASNVF---LGV 527

Query: 385 FCSMWLIVGQKSS------KSLRERLGTSKADSWHEDRRAKKLW------LSHEKYIEKV 432
           +    L+ G  ++      + L  +         H     + L+      +S  K++  +
Sbjct: 528 YVDDILLTGTDTNEIDELKRFLDNQFKIKDLGRLHYFLGLEVLYKDDGILVSQRKFVLDL 587

Query: 433 LQRFRMENAKAVSCPLTNHFKLSSKQYPSTDREKEEMEKIPYASAVGSLMYAMICTRPDI 492
           L+ F  ++   +S PL  + KL S +    D      +   Y   +G L + +  TR D+
Sbjct: 588 LKEFNCDHMAPLSSPLDPNIKLRSHEGKVLD------DPTYYRKLIGKLNF-LTHTRLDL 640

Query: 493 THSVGVVSRLLLNSGKEYWTAV 514
            + V ++S+ + +  + +  A 
Sbjct: 641 AYGVQLLSQYMQDPREPHLHAA 662


>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
            chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
            EGN_Mt090430 20090702
          Length = 1396

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 78/194 (40%), Gaps = 35/194 (18%)

Query: 331  DCVCKLKKSLYGLKQALRXWYKKFESVMGEQGYRKTTSDHCVFYEE--ILYXXLPYFCSM 388
            + VCKL KSLYGLKQA R WY K  S++ +  Y +  SDH +F ++    Y  L  +   
Sbjct: 1003 NTVCKLNKSLYGLKQASRKWYDKLTSILLKHQYTQAHSDHSLFTKKTGTSYTILLVYVDD 1062

Query: 389  WLIVGQ------------------KSSKSLRERLGTSKADSWHEDRRAKKLWLSHEKYIE 430
             ++ G                   K    L+  LG   A S         + L  +KY  
Sbjct: 1063 IILAGDSLEEFQYIKSILDTLFKIKDLGQLKFFLGLEVAHS------QLGISLCQKKYCL 1116

Query: 431  KVLQRFRMENAKAVSCPLTNHFKLSSKQYPSTDREKEEMEKIP-YASAVGSLMYAMICTR 489
             +L       +K  S P     KL               E IP Y   +G L+Y +  TR
Sbjct: 1117 DLLADSGTIGSKPASTPSDPSLKLHKD-------GALPYEDIPSYRRLIGRLLY-LNTTR 1168

Query: 490  PDITHSVGVVSRLL 503
            PDIT+    +S+ L
Sbjct: 1169 PDITYITQQLSQFL 1182