Jatropha Genome Database

JcCB0118411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0118411.10 - phase: 1 /TE/partial
         (259 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g074430.1 integrase, related chr08_pseudomolecule_IMG...    82   4e-16
IMGA|Medtr3g058900.1 Zinc finger, CCHC-type chr03_pseudomolecule...    74   5e-14
IMGA|Medtr1g034520.1 Protein kinase; chr01_pseudomolecule_IMGAG_...    54   8e-08
IMGA|Medtr1g034370.1 hypothetical protein chr01_pseudomolecule_I...    54   1e-07
IMGA|AC146568_11.1 integrase, related AC146568.11 50809-50552 H ...    50   1e-06
IMGA|Medtr5g029040.1 LTRGag-pol-polymerase 3, related chr05_pseu...    47   7e-06

>IMGA|Medtr8g074430.1 integrase, related
           chr08_pseudomolecule_IMGAG_V3 14788217-14787399 H
           EGN_Mt090430 20090702
          Length = 272

 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 23/217 (10%)

Query: 13  TKIPHFDGH-YDHWSELMENLLRAKDL--WSLVE----------KGFTEPLEETRLTEAQ 59
           T+ P FDG  Y  W   M+  ++  D   W  +E           GFT+P  +T  T   
Sbjct: 16  TRPPFFDGKKYYIWKHRMQIFVQGTDFDAWKAIEHGPFFPTHIVNGFTKPKSKTEWT--- 72

Query: 60  QTQLDDDRTK---DYQVKHYLFQAIDRTVFEQILDRRTSKIVWDSLKRKFGGNQKVKKSL 116
               DDD+ K   D + KH +  A+    F  ++   T++ +W++L+    G  +VK + 
Sbjct: 73  ----DDDKKKVHPDSRAKHLISCALCNDEFSNVMYCETAREMWNTLQNIHEGTGEVKMAR 128

Query: 117 LNALRREFEVLEMRNDETITEYFARVMLVANKMRSNGEEMPDKKIVEKILRTLTDKFTYV 176
           +  L  E+E   M+  E I +   R   V N + S G+++P++ +V K+LR L+ K+ + 
Sbjct: 129 IGYLTGEYERFCMKPGENIHDMQMRFYDVVNHLASLGKKIPNEDLVSKVLRCLSKKWRHK 188

Query: 177 VVSIEESKDTDTMSIDELQSSLVVHEQKFRRPSNNNE 213
           V +I +S D  TM +  L   L  HE +  R   N+E
Sbjct: 189 VRAITKSIDFPTMLLVSLFRELEEHETELNRLDKNDE 225


>IMGA|Medtr3g058900.1 Zinc finger, CCHC-type
           chr03_pseudomolecule_IMGAG_V3 13082612-13083121 H
           EGN_Mt090430 20090702
          Length = 169

 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 19/150 (12%)

Query: 129 MRNDETITEYFARVMLVANKMRSNGEEMPDKKIVEKILRTLTDKFTYVVVSIEESKDTDT 188
           M+ ++ I +YF+ V+ +  +M+  GE + DK ++EKILRTL  +F ++V++IEE+KD + 
Sbjct: 1   MKKEDKIKDYFSSVLTITKQMKICGETLFDKSVMEKILRTLPSQFDHLVITIEETKDLNE 60

Query: 189 MSIDELQSSLVVHEQKF-RRPSNNNEDQALKVEGRSNTS------------------NXX 229
             I+ELQ +L  HE K   R    +E+Q+L    +   S                     
Sbjct: 61  AKIEELQGALEAHEMKVTSRKEEKDEEQSLLARFKQEESMKEYWKKKKGKNHQKHGDKPE 120

Query: 230 XXXXXXXXXXXXXTSFNKATVECYRCHDLG 259
                          FNK  V+C+ C   G
Sbjct: 121 SLKSGGKSSKNQGKKFNKKNVQCFNCEKYG 150


>IMGA|Medtr1g034520.1 Protein kinase; chr01_pseudomolecule_IMGAG_V3
           8264488-8267727 H EGN_Mt090430 20090702
          Length = 509

 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 40/54 (74%)

Query: 145 VANKMRSNGEEMPDKKIVEKILRTLTDKFTYVVVSIEESKDTDTMSIDELQSSL 198
           + N+ R NGE + D   +EK+L+ LT +F ++VV++EESK+ D M +++LQ+SL
Sbjct: 455 LTNQTRRNGETIIDLMKIEKVLKILTSRFHHIVVALEESKNLDEMKVEDLQASL 508


>IMGA|Medtr1g034370.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 8218562-8219420 E
           EGN_Mt090430 20090702
          Length = 63

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 40/54 (74%)

Query: 145 VANKMRSNGEEMPDKKIVEKILRTLTDKFTYVVVSIEESKDTDTMSIDELQSSL 198
           + N+ R NGE + D   +EK+L+ LT +F ++VV++EESK+ D M +++LQ+SL
Sbjct: 9   LTNQTRRNGETIIDLMKIEKVLKILTSRFHHIVVALEESKNLDEMKVEDLQASL 62


>IMGA|AC146568_11.1 integrase, related AC146568.11 50809-50552 H
           EGN_Mt090430 20090702
          Length = 85

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 48/85 (56%)

Query: 98  VWDSLKRKFGGNQKVKKSLLNALRREFEVLEMRNDETITEYFARVMLVANKMRSNGEEMP 157
           +WD+L+    G   VK+S++N L +++E+  M    +I+    R   + NK++  G ++P
Sbjct: 1   MWDALETLHEGMNNVKQSMINTLVQQYELFRMEEGGSISSVQMRFTHIVNKLQILGNDIP 60

Query: 158 DKKIVEKILRTLTDKFTYVVVSIEE 182
           ++    KILR +T  +   V +I+E
Sbjct: 61  NQDFTYKILRCMTRDWQPKVTAIKE 85


>IMGA|Medtr5g029040.1 LTRGag-pol-polymerase 3, related
           chr05_pseudomolecule_IMGAG_V3 12052697-12051982 H
           EGN_Mt090430 20090702
          Length = 223

 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 14/163 (8%)

Query: 21  HYDHWSELMENLLRAKDLWSLVEKGFTEPLEETRLTEAQQTQLDDDRTKDYQVKHYLFQA 80
           HYD W+EL  N   A D    V      P   T   +AQ + LD        VK +++  
Sbjct: 5   HYDSWAELFLNAANAFD----VADHIIPPKNATVKEDAQWSCLDA------IVKQWIYST 54

Query: 81  IDRTVFEQIL-DRRTSKIVWDSLKRKFGGNQKVKKSLLNALRREFEVLEMRNDETITEYF 139
           I   +   IL    T++  W+ LK  F  N   K S    L ++F  + M N    + Y 
Sbjct: 55  ISIDLLHTILKPGATAQEAWNRLKDIFHDN---KNSRAVYLEQQFSQIHMDNYPNASSYC 111

Query: 140 ARVMLVANKMRSNGEEMPDKKIVEKILRTLTDKFTYVVVSIEE 182
             + L+A ++ + G  + + ++V +++  L+  +  +   I++
Sbjct: 112 QALKLIAEQLGNVGAPVSEDRLVLRLVTGLSSGYDSLATIIQQ 154