Jatropha Genome Database

JcCB0118121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0118121.10 + phase: 2 /pseudo/partial
         (645 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|fpc265_22.1 Helicase, C-terminal fpc265 101840-115910 E EGN...    82   8e-16

>IMGA|fpc265_22.1 Helicase, C-terminal fpc265 101840-115910 E
           EGN_Mt090430 20090702
          Length = 2089

 Score = 82.0 bits (201), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 64/110 (58%), Gaps = 11/110 (10%)

Query: 110 QVKDNSAHYISMLSLINSREDELNNGNMKIH---DSADVAKLKEILAPYTAYECKSDSFC 166
           Q KD S H      L  +  ++ N     IH   DS  V   KE ++ + A  CKSDS+ 
Sbjct: 534 QQKDKSDHASGTGHLKGTTVEDKN-----IHALLDSQSVVHPKEKVSSHIANRCKSDSYK 588

Query: 167 YEEYWVPVQLSNVQLEQYCAVLLSNPVLL---FKNDTVDALREIIISIRK 213
             EYWVPVQ+SNVQLEQYC  LLSN   L    K D+V A+R+++ISIRK
Sbjct: 589 LVEYWVPVQISNVQLEQYCNTLLSNASFLCSSPKIDSVGAIRDVLISIRK 638



 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 9/142 (6%)

Query: 280 LKVFRLYSRYTVEERALIHAKKSGSNEINVDYMNRDSCYSLLGWGLARLFNKLDDFHQCK 339
           +K FRLYS +TVEE+ALI +++  + +IN    +R   ++LL WG   LF++L  FH   
Sbjct: 809 IKTFRLYSPFTVEEKALILSRQGKTLDINCPSSSRGLSHTLLMWGAVHLFDELRVFHDGA 868

Query: 340 TLASGSKIYSEWPFLDNVLQELLDQLLCNRED-EPSIYSFISKAQQDAGAYTREISVIDE 398
           T  S  K     P L+  + +    L    ED + S  S + K QQ  GAY     +  E
Sbjct: 869 TSTSNLK-----PLLEETVSQFSSCLADVGEDSDTSNCSILLKVQQHGGAYLANSPLFGE 923

Query: 399 KEVQ--DTGPPALFWDKIFLVG 418
            E +  D   P  FW+ + LVG
Sbjct: 924 LEFRSPDEESPQKFWNNL-LVG 944