Jatropha Genome Database

JcCB0117851.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0117851.20 + phase: 0 /partial
         (59 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g145580.1 Actin-binding FH2; C2 calcium/lipid-binding...    84   1e-17
IMGA|Medtr1g016730.1 Actin-binding FH2; C2 calcium/lipid-binding...    79   6e-16
IMGA|Medtr5g026820.1 C2 calcium/lipid-binding region, CaLB; chr0...    56   4e-09

>IMGA|Medtr8g145580.1 Actin-binding FH2; C2 calcium/lipid-binding
           region, CaLB; chr08_pseudomolecule_IMGAG_V3
           35409574-35425027 E EGN_Mt090430 20090702
          Length = 1180

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 43/47 (91%)

Query: 1   SSVLALEDSALDVDQVDNLIKFCPTKEEMELLKGYTGEKEKLGKCEQ 47
           SSVLALE+SALD D V+NLIKFCPTKEEME++K Y GEKEKLG+CEQ
Sbjct: 887 SSVLALEESALDTDTVENLIKFCPTKEEMEIIKNYNGEKEKLGRCEQ 933


>IMGA|Medtr1g016730.1 Actin-binding FH2; C2 calcium/lipid-binding
            region, CaLB; chr01_pseudomolecule_IMGAG_V3
            3303853-3295156 H EGN_Mt090430 20090702
          Length = 1641

 Score = 79.0 bits (193), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 36/45 (80%), Positives = 40/45 (88%)

Query: 3    VLALEDSALDVDQVDNLIKFCPTKEEMELLKGYTGEKEKLGKCEQ 47
            VLAL+DS L VDQV+NLIKFCPTKEEM+ LK YTG+KE LGKCEQ
Sbjct: 1393 VLALDDSVLYVDQVENLIKFCPTKEEMDQLKAYTGDKENLGKCEQ 1437


>IMGA|Medtr5g026820.1 C2 calcium/lipid-binding region, CaLB;
           chr05_pseudomolecule_IMGAG_V3 10860241-10855241 E
           EGN_Mt090430 20090702
          Length = 975

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/34 (70%), Positives = 30/34 (88%)

Query: 1   SSVLALEDSALDVDQVDNLIKFCPTKEEMELLKG 34
           ++VLAL+   LD+DQV+NLIKFCPTKEEME+LK 
Sbjct: 936 NAVLALDSCVLDIDQVENLIKFCPTKEEMEILKA 969