Jatropha Genome Database

JcCB0115651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0115651.10 + phase: 2 /pseudo/partial
         (532 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g025250.1 Carotenoid oxygenase chr05_pseudomolecule_I...   364   e-101
IMGA|Medtr5g025270.1 Carotenoid oxygenase chr05_pseudomolecule_I...   361   e-100
IMGA|Medtr5g025290.1 Carotenoid oxygenase chr05_pseudomolecule_I...   357   1e-98
IMGA|Medtr3g130620.1 Carotenoid oxygenase chr03_pseudomolecule_I...   110   1e-24
IMGA|Medtr7g040830.1 Carotenoid oxygenase chr07_pseudomolecule_I...    64   2e-10

>IMGA|Medtr5g025250.1 Carotenoid oxygenase
           chr05_pseudomolecule_IMGAG_V3 10093326-10091325 E
           EGN_Mt090430 20090702
          Length = 578

 Score =  364 bits (935), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/513 (38%), Positives = 294/513 (57%), Gaps = 28/513 (5%)

Query: 30  VLDKVENVLVSHERKYPLPKTADPTVQISGNFAPV-PEQPVVRDLPVTGKIPDSIRGVYL 88
            LD + N  +      P+  + DP   +S NFAPV  E P  + + + G +P S+ G Y+
Sbjct: 78  TLDDIINTFIDP----PIKPSVDPRHVLSQNFAPVLDELPPTQCVIIKGTLPPSLYGAYI 133

Query: 89  RNGANPLHEPVTGHHFFDGDGMVHAVRFEEGSVSYACRFTETNRLVQERKLGRPIFPKAI 148
           RNG NP   P   +H FDGDGM+HA+    G  +   R+ +T +   E K G  + P   
Sbjct: 134 RNGPNPQFLPRGPYHLFDGDGMLHAITISNGKATLCSRYVKTYKYKIENKAGHQLIPNVF 193

Query: 149 GELHGHSGIARLLLFYARGIFDIV-------DPSHGLGVANAGLVYFNGRLLAMSEDDLP 201
                 SG   L+   ARG   +        +PS+G+G+ N  L  F  RL A+ E DLP
Sbjct: 194 ------SGFNSLIALAARGSVVVARVLTGQYNPSNGIGLVNTSLALFGNRLFALGESDLP 247

Query: 202 YHVRVLPCGDLKTVGRYNFNGQLKSTMIAHPKVDPFSGELFALSYDVVQKPYLKYFRFSP 261
           Y V++ P GD++T+GRY+FNG+L  +M AHPK+D  + E FA  Y  + +P+L YFRF  
Sbjct: 248 YEVKLTPNGDIQTMGRYDFNGKLLMSMTAHPKIDSDTSECFAFRYGPI-RPFLTYFRFDS 306

Query: 262 IGTKSKDVEI-SLDEPTMIHDFAITEKFVVIPDQQLVFKLPEMIRGGSPVIYDENKISRF 320
            G K  DV + S+  P+ +HDFAIT+K+ V  D QL      MI GGSPV  D +K+SR 
Sbjct: 307 NGVKHNDVPVFSMKRPSFLHDFAITKKYAVFADIQLEMNPLGMIFGGSPVRSDPSKVSRI 366

Query: 321 GILDKKANDSSKIRWIEAPDCFCFHLWNAWEEPESDEIVVIGSCMTPPDSIFNECDESLK 380
           GIL + AND SK++W + P     H  NAW+E +   + ++ + +     +    D  + 
Sbjct: 367 GILPRYANDESKMKWFDVPGFNIMHTINAWDEEDGGTVTLVATNILSVQHVMERMD-LIH 425

Query: 381 SVLSEIRLNLKTGKSIRRPIISDKHQVNLEAGMVNRNLLGRKTQFAYLALAEPWPKVSGF 440
           +++ ++R+N++TG   R+P+ +     NL+  ++N + LG+K++F Y A+  P PK SG 
Sbjct: 426 AMIEKVRINVETGLVTRQPLSAR----NLDLAVINNDFLGKKSRFVYAAIGNPMPKFSGV 481

Query: 441 AKVDLSTG-ETKKYIYGDNKYGGEPLFLPDSNSGKEDDGFILCFVHDEKEWKSELQIVNA 499
            K+D+  G E    +YG+  YGGEP F+      +EDDG+++ +VHDEK+ +S+  +++A
Sbjct: 482 VKIDVLKGEEVGCRLYGEGCYGGEPFFVAMEGGEEEDDGYLVSYVHDEKKGESKFLVMDA 541

Query: 500 KNLQLE--ATVKLPSRVPYGFHGTFITAKDLEK 530
           K+ + E  A VKLP RVPYGFHG F+   D+ K
Sbjct: 542 KSPEFEIVAEVKLPRRVPYGFHGLFVKQSDITK 574


>IMGA|Medtr5g025270.1 Carotenoid oxygenase
           chr05_pseudomolecule_IMGAG_V3 10102084-10100345 E
           EGN_Mt090430 20090702
          Length = 579

 Score =  361 bits (926), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/510 (37%), Positives = 302/510 (59%), Gaps = 13/510 (2%)

Query: 27  ASMVLDKVENVLVSHERKYPLPKTADPTVQISGNFAPV-PEQPVVRDLPVTGKIPDSIRG 85
           ++++L+ +++++ +     P+  + DP   +S NFAPV  E P  +   + G +P S+ G
Sbjct: 73  SALILNTLDDIINTFIDP-PIKPSVDPRHVLSQNFAPVLDELPPTQCKVIKGTLPPSLNG 131

Query: 86  VYLRNGANPLHEPVTGHHFFDGDGMVHAVRFEEGSVSYACRFTETNRLVQERKLGRPIFP 145
           VY+RNG NP   P   +H FDGDGM+HAV+   G  +   R+ +T +   E + G  I P
Sbjct: 132 VYIRNGPNPQFLPRGPYHLFDGDGMLHAVKITNGKATLCSRYVQTYKYKIENEAGYQILP 191

Query: 146 KAIGELHGHSGIA-RLLLFYARGIFDIVDPSHGLGVANAGLVYFNGRLLAMSEDDLPYHV 204
                 +   G+A R  +  AR +    +P +G+G+ N  L  F  RL A+ E DLPY +
Sbjct: 192 NVFSGFNSLIGLAARGSVAVARVLTGQYNPINGIGLINTSLALFGNRLFALGESDLPYEI 251

Query: 205 RVLPCGDLKTVGRYNFNGQLKSTMIAHPKVDPFSGELFALSYDVVQKPYLKYFRFSPIGT 264
           +V P GD++T+GRY+FNG+L   M AHPK+D  +GE FA  Y ++ +P+L YFRF   G 
Sbjct: 252 KVTPNGDIQTIGRYDFNGKLFMNMTAHPKIDSDTGECFAYRYGLI-RPFLTYFRFDSNGV 310

Query: 265 KSKDVEI-SLDEPTMIHDFAITEKFVVIPDQQLVFKLPEMIRGGSPVIYDENKISRFGIL 323
           K  DV + S+  P+ +HDFAIT+K+ +  D QL     +MI GGSPV  D +K+ R GIL
Sbjct: 311 KHNDVPVFSMKRPSFLHDFAITKKYALFADIQLEINPLDMIFGGSPVRSDPSKVPRIGIL 370

Query: 324 DKKANDSSKIRWIEAPDCFCFHLWNAWEEPESDEIVVIGSCMTPPDSIFNECDESLKSVL 383
            + A++ SK++W + P     HL NAW+E +   + ++   +   + +     E +  ++
Sbjct: 371 PRYADNESKMKWFDVPGLNIMHLINAWDEEDGKTVTIVAPNILCVEHMMERL-ELIHEMI 429

Query: 384 SEIRLNLKTGKSIRRPIISDKHQVNLEAGMVNRNLLGRKTQFAYLALAEPWPKVSGFAKV 443
            ++R+N++TG   R+P+ +     NL+  ++N   LG+K +F Y A+  P PK SG  K+
Sbjct: 430 EKVRINVETGIVTRQPLSAR----NLDLAVINNEFLGKKHRFIYAAIGNPMPKFSGVVKI 485

Query: 444 DLSTG-ETKKYIYGDNKYGGEPLFLPDSNSGKEDDGFILCFVHDEKEWKSELQIVNAKNL 502
           D+  G E    +YG++ YGGEP F+   +  +EDDG+++ +VHDEK+ +S   +++AK+ 
Sbjct: 486 DVLKGEEVGCRLYGEDCYGGEPFFVAREDGEEEDDGYLVSYVHDEKKGESRFLVMDAKSP 545

Query: 503 QLE--ATVKLPSRVPYGFHGTFITAKDLEK 530
           + E  A VKLP RVPYGFHG F+   D+ +
Sbjct: 546 EFEIVAEVKLPRRVPYGFHGLFVKESDITR 575


>IMGA|Medtr5g025290.1 Carotenoid oxygenase
           chr05_pseudomolecule_IMGAG_V3 10116366-10118405 E
           EGN_Mt090430 20090702
          Length = 581

 Score =  357 bits (915), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 190/491 (38%), Positives = 290/491 (59%), Gaps = 11/491 (2%)

Query: 46  PLPKTADPTVQISGNFAPV-PEQPVVRDLPVTGKIPDSIRGVYLRNGANPLHEPVTGHHF 104
           P+  + DP   +S NFAPV  E P  +   + G +P S+ GVY+RNG NP   P   +H 
Sbjct: 92  PIKPSVDPRHVLSQNFAPVLDELPPTQCKVIKGTLPPSLNGVYIRNGPNPQFLPRGPYHL 151

Query: 105 FDGDGMVHAVRFEEGSVSYACRFTETNRLVQERKLGRPIFPKAIGELHGH-SGIARLLLF 163
           FDGDGM+HA+    G  +   R+ +T +   E + G  + P      +   +  AR  + 
Sbjct: 152 FDGDGMLHAITISNGKATLCSRYVQTYKYKIENEAGYQLIPNVFSGFNSLIASAARGSVT 211

Query: 164 YARGIFDIVDPSHGLGVANAGLVYFNGRLLAMSEDDLPYHVRVLPCGDLKTVGRYNFNGQ 223
            AR I    +PS+G+G+AN  L  F  +L A+ E DLPY + + P GD++T+GRY+FNG+
Sbjct: 212 AARVISGQYNPSNGIGLANTSLALFGNKLFALGESDLPYEINLTPNGDIQTIGRYDFNGK 271

Query: 224 LKSTMIAHPKVDPFSGELFALSYDVVQKPYLKYFRFSPIGTKSKDVEI-SLDEPTMIHDF 282
           L  +M AHPK+D  +GE FA  Y  +  P+L YFRF   G K  DV + S+  P+ +HDF
Sbjct: 272 LSMSMTAHPKIDGDTGETFAFRYGPM-PPFLTYFRFDANGVKHNDVPVFSMTRPSFLHDF 330

Query: 283 AITEKFVVIPDQQLVFKLPEMIRGGSPVIYDENKISRFGILDKKANDSSKIRWIEAPDCF 342
           AIT+K+ V  D QL     +MI GGSPV  D +K+SR GIL + A+D SK++W + P   
Sbjct: 331 AITKKYAVFTDIQLGMNPLDMISGGSPVGSDPSKVSRIGILPRYASDESKMKWFDVPGFN 390

Query: 343 CFHLWNAWEEPESDEIVVIGSCMTPPDSIFNECDESLKSVLSEIRLNLKTGKSIRRPIIS 402
             H  N+W+  + +E V + +          E  E + +++ ++++N+KTG   R+P+ +
Sbjct: 391 IMHAINSWDGEDDEETVTLIAPNVLSIEHTMERLELVHAMIEKVKINIKTGIVSRQPLSA 450

Query: 403 DKHQVNLEAGMVNRNLLGRKTQFAYLALAEPWPKVSGFAKVDLSTG-ETKKYIYGDNKYG 461
                NL+  ++N + +G+K +F Y A+  P PK+SG  K+D+  G E    +YG+  YG
Sbjct: 451 R----NLDFAVINGDYMGKKNRFVYAAIGNPMPKISGVVKIDVLKGEEVGCRLYGEGCYG 506

Query: 462 GEPLFLPDSNSGKEDDGFILCFVHDEKEWKSELQIVNAKNLQLE--ATVKLPSRVPYGFH 519
           GEP F+   +  +EDDG+++ +VHDEK+ +S+  +++AK+ + E  A VKLP RVPYGFH
Sbjct: 507 GEPFFVAREDGEEEDDGYLVSYVHDEKKGESKFLVMDAKSPEFEIVAEVKLPRRVPYGFH 566

Query: 520 GTFITAKDLEK 530
           G F+   D+ K
Sbjct: 567 GLFVKESDITK 577


>IMGA|Medtr3g130620.1 Carotenoid oxygenase
           chr03_pseudomolecule_IMGAG_V3 33198267-33194913 E
           EGN_Mt090430 20090702
          Length = 565

 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 122/495 (24%), Positives = 211/495 (42%), Gaps = 49/495 (9%)

Query: 61  FAPVPEQPVVRDLPVTGKIPDSIRGVYLRNGANPLH-EPVTGHHFFDGDGMVHAVRFEEG 119
           +  +P++    +L V G IP  ++G Y+RNG    +       H FDG   +  + FE+G
Sbjct: 85  WTSIPQERWEGELLVQGHIPLWLKGTYIRNGPGMWNIGDYNFRHLFDGYATLVGLHFEDG 144

Query: 120 SVSYACRFTETNRLVQERKLGRPIFPKAIGELHGHSGIARLLLFYARGIFDIVDPSHGLG 179
            +    R  E+ +  Q  K  + I  +   E+      A   L Y   + ++   S    
Sbjct: 145 RLVAGHRQVES-QAYQAAKKNQKICYREFSEVPK----AENFLAYVGELANLFSGSSLTD 199

Query: 180 VANAGLVYF-NGRLLAMSEDDLPYHVRVLPCGDLKTVGRYNFNGQLKSTM-IAHPKVDPF 237
            AN G+V   +GR++ ++E        V+    L+T+G+++++  L   +  AHP V   
Sbjct: 200 NANTGVVKLGDGRVVCLTETQ--KGSIVIDPDTLETIGKFDYSDSLGGLIHSAHPIVT-- 255

Query: 238 SGELFALSYDVVQKPYLKYFRFSPIGTKSKDVEISLD-----EPTMIHDFAITEKFVVIP 292
             E   L  D+V+  YL   R  P G+  + V   +D      P  +H F +TE +V++P
Sbjct: 256 DNEFLTLIPDLVKPGYL-VARMEP-GSNERKVIGRVDCRGGTSPGWVHSFPVTEHYVIVP 313

Query: 293 DQQLVFKLPEMIRGGSPVIYD-----ENKISRFGILDKKANDSSKI-RWIEAPDCFCFHL 346
           +  L +    ++R     +Y      E+K      +      S KI   +E P    FH 
Sbjct: 314 EMPLRYCAQNLLRAEPTPLYKFQWHPESK----AFMHVMCKTSGKIVASVEVPLFVTFHF 369

Query: 347 WNAWEEPESDEIV--VIGSCMTPPDSI-------------FNECDESLKSVLSEIRLNLK 391
            NA+EE + D  V  VI  C     +              FN  D    + +   R+ L 
Sbjct: 370 INAYEEEDEDGRVTAVIADCCEHNSNTDILDKLRLQNLRSFNGEDVLPDARVGRFRIPLD 429

Query: 392 TG--KSIRRPIISDKHQVNLEAGMVNRNLLGRKTQFAYLALAE-PWPKVSGFAKVDLSTG 448
                ++   +  ++H   ++   +N N LG K ++AY   A+ P    +   K+DL + 
Sbjct: 430 GSPYGTLDAALDPNEHGKGMDMCSINPNYLGLKYRYAYACGAQRPCNFPNTLTKIDLQSE 489

Query: 449 ETKKYIYGDNKYGGEPLFLPDSNSGKEDDGFILCFVHDEKEWKSELQIVNAKNLQLEATV 508
             K + Y +     EP F+P   + KEDDG ++  +  EK  +    +++    +  A  
Sbjct: 490 RAKNW-YEEGAVPSEPFFVPRPGATKEDDGVVISII-SEKNGEGYALVLDGSTFEEIARA 547

Query: 509 KLPSRVPYGFHGTFI 523
           K P  +PYG HG ++
Sbjct: 548 KFPYGLPYGLHGCWV 562


>IMGA|Medtr7g040830.1 Carotenoid oxygenase
           chr07_pseudomolecule_IMGAG_V3 10149889-10155418 E
           EGN_Mt090430 20090702
          Length = 621

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 117/518 (22%), Positives = 194/518 (37%), Gaps = 124/518 (23%)

Query: 103 HFFDGDGMVHAVRFEEGS--VSYACRFTETNRLVQE--RKLGRPIFPKAIGELHGHSGIA 158
           H  DG G + A  F+  +  V Y  ++ +T   V+E  RK G                  
Sbjct: 123 HPLDGHGYLRAFTFDNATNEVKYMAKYIKTEAQVEEYDRKTGS----------------- 165

Query: 159 RLLLFYARGIFDIVDPSHGLG-------VANAGLVYFNGRLLAMSEDDLPYHVRVLPCGD 211
               F  RG F ++     +G       VAN  ++ +  +LL M E   PY +     G 
Sbjct: 166 --WRFTHRGPFSVLKGGKKIGNTKVMKNVANTSVLMWGKKLLCMWEGGNPYEIE---SGT 220

Query: 212 LKTVGRYN-----------------------------FNGQLK---STMIAHPKVDPFSG 239
           L T+G++N                               G  K     +++H KVD    
Sbjct: 221 LDTIGKFNMVDGCDMDDHNVNHGGDVWEVAATLLKPILYGIFKMPPKRLLSHYKVDSSRS 280

Query: 240 ELFALSYDVVQKPYLKY-FRFSPIGTKSKDVE---ISLDEPTMIHDFAITEK-FVVIPDQ 294
            L  +S +       +  F F+      K VE     + +  MIHD+A T+  ++V  ++
Sbjct: 281 RLLTVSCNAEDMLLPRSSFTFTEYDNNFKLVEKQEFKIPDHLMIHDWAFTDTHYIVFANR 340

Query: 295 QLVFKLPEM--IRGGSPVIYD-----ENKISRFGILDKKAN--DSSKIRW---IEAP-DC 341
             +  L  M  + G SP+I           S   +L +  N  +S K  W   +E P   
Sbjct: 341 IKLDVLGSMGAVCGASPMISALTVNPSKSTSPIYLLPRFPNKPESKKRDWRKPLEVPSQL 400

Query: 342 FCFHLWNAWEEPESD---EIVVIGSCMTPP------------------DSIFNECDESLK 380
           +  H+ NA+E  ++    EI +  S  +                     SI N   E+  
Sbjct: 401 WLLHVGNAFEVKQAHGNLEIQIQASACSYQWFNFRKLFGYNWQTQKLDPSIMNVKGENAL 460

Query: 381 SVLSEIRLNLKTGKSIR----RPIISDKHQVNLEAGMVNRNLLGRKTQFAYLALAE---- 432
             L ++ + L +  + +    +PI   K   +  A   N +  G++ ++ Y A       
Sbjct: 461 PHLVQVSIKLDSDYNCQECDVKPINKWKKSADFPA--TNPSFSGKQNKYLYAATTLGSRK 518

Query: 433 --PWPKVSGFAKVDLSTGETKKYIYGDNKYGGEPLFLPDSNSGKEDDGFILCFVHDEKEW 490
             P        K DL     K +  G  K+ GEP+F+P     +EDDG++L   +     
Sbjct: 519 TLPSFPFDTIVKFDLVNNSVKAWTAGSRKFVGEPIFVPKGE--EEDDGYLLVVEYATSMQ 576

Query: 491 KSELQIVNAKNL----QLEATVKLPSRV--PYGFHGTF 522
           +  L I+N K +     L A +++P  +  P GFHG +
Sbjct: 577 RCCLVILNPKEIGTKKALVARIEIPMHLNFPLGFHGLW 614