Jatropha Genome Database

JcCB0115461.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0115461.20 + phase: 0 /partial
         (92 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g126820.1 hypothetical protein chr01_pseudomolecule_I...    55   9e-09
IMGA|Medtr5g023930.1 Zinc finger, CCHC-type chr05_pseudomolecule...    55   1e-08
IMGA|Medtr8g024170.1 hypothetical protein chr08_pseudomolecule_I...    50   3e-07
IMGA|Medtr1g093100.1 Zinc finger, CCHC-type chr01_pseudomolecule...    48   1e-06
IMGA|Medtr4g159470.1 hypothetical protein chr04_pseudomolecule_I...    45   7e-06

>IMGA|Medtr1g126820.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 28356085-28354664 H
           EGN_Mt090430 20090702
          Length = 473

 Score = 55.1 bits (131), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 45/79 (56%)

Query: 12  YVFQFFHEVDVHRVLLMCPCTFDNQLLLLERLGSYPTSLDVPLFFVPLWVQVKGLRSGFR 71
           ++FQFF + D+ RVL   P  FDN  +LL +L      L +P+  + +W+Q   L  GF 
Sbjct: 69  FLFQFFDQGDMERVLHTGPWHFDNYPMLLRKLEFGENPLTMPIDMMDIWIQAHNLPFGFM 128

Query: 72  SERVLKDMGDRIGQFMEAD 90
           +E +   +G+ +G+ ++ D
Sbjct: 129 TESMGHLLGNHVGKLLKYD 147


>IMGA|Medtr5g023930.1 Zinc finger, CCHC-type
           chr05_pseudomolecule_IMGAG_V3 9477733-9471443 E
           EGN_Mt090430 20090702
          Length = 652

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 4/93 (4%)

Query: 2   MQIREINGGVYVFQFFHEVDVHRVLLMCPCTFDNQLLLLERL--GSYPTSLDVPLFFVPL 59
           ++I  I+   ++FQFFH  D+ RV+   P  FDN  L+L+++  G  PT+   PL  + +
Sbjct: 230 VEISRIDNNRFMFQFFHHKDMERVIRTGPWLFDNFPLVLQKVSFGDDPTT--SPLDTIEM 287

Query: 60  WVQVKGLRSGFRSERVLKDMGDRIGQFMEADSK 92
           WVQ   L  GF +E +   +G ++G  ++ D++
Sbjct: 288 WVQAHNLPFGFMTESMGILLGSQVGGLVKYDAE 320


>IMGA|Medtr8g024170.1 hypothetical protein
           chr08_pseudomolecule_IMGAG_V3 4512491-4512114 H
           EGN_Mt090430 20090702
          Length = 125

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 39/60 (65%)

Query: 4   IREINGGVYVFQFFHEVDVHRVLLMCPCTFDNQLLLLERLGSYPTSLDVPLFFVPLWVQV 63
           ++E   G+++FQFFH++D+  VL   P T+DN  L+LE+L       D+ L ++ LWV+V
Sbjct: 66  VKEAQPGLFLFQFFHKLDLEEVLKGGPWTYDNHSLVLEKLRIGVPLKDIQLNYMNLWVRV 125


>IMGA|Medtr1g093100.1 Zinc finger, CCHC-type
           chr01_pseudomolecule_IMGAG_V3 18824066-18830760 E
           EGN_Mt090430 20090702
          Length = 779

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 43/79 (54%)

Query: 12  YVFQFFHEVDVHRVLLMCPCTFDNQLLLLERLGSYPTSLDVPLFFVPLWVQVKGLRSGFR 71
           ++FQFF+  D+ RV    P  FD+  L+  ++        +P+  + LW+QV  L  GF 
Sbjct: 362 FMFQFFNYADMERVTQQGPWLFDSYPLIWSKVSDGKDPFTMPIDSIELWMQVHNLPFGFM 421

Query: 72  SERVLKDMGDRIGQFMEAD 90
           +E +   +G+ +G+ ++ D
Sbjct: 422 TETMGILLGNHVGKLVKYD 440


>IMGA|Medtr4g159470.1 hypothetical protein
           chr04_pseudomolecule_IMGAG_V3 40244777-40245604 H
           EGN_Mt090430 20090702
          Length = 213

 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 20/90 (22%)

Query: 1   GMQIREINGGVYVFQFFHEVDVHRVLLMCPCTFDNQLLLLERLGSYPTSLDVPLFFVPLW 60
           G+ ++E    +++FQFFH++D+  +L   P T+D+  L+LE++ + PT            
Sbjct: 63  GVAVKEAQPRLFLFQFFHKLDMEEILNGGPWTYDSHSLVLEKVYNLPT------------ 110

Query: 61  VQVKGLRSGFRSERVLKDMGDRIGQFMEAD 90
                   G   E+V   +G+ IG+F+  D
Sbjct: 111 --------GMMKEKVGTGLGNYIGEFLTYD 132