Jatropha Genome Database

JcCB0115061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0115061.10 - phase: 0 /partial
         (81 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g107200.1 Winged helix repressor DNA-binding; chr04_p...   124   1e-29
IMGA|Medtr4g107190.1 Winged helix repressor DNA-binding; chr04_p...   123   2e-29
IMGA|Medtr7g132600.1 Transcription factor E2F/dimerisation partn...    67   2e-12

>IMGA|Medtr4g107200.1 Winged helix repressor DNA-binding;
           chr04_pseudomolecule_IMGAG_V3 23346768-23350809 E
           EGN_Mt090430 20090702
          Length = 344

 Score =  124 bits (311), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/75 (80%), Positives = 66/75 (88%), Gaps = 1/75 (1%)

Query: 1   TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQSDDMAPNIATDGGE 60
           TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAM+F +R QSD +  N+ TDGGE
Sbjct: 245 TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMEFGDRTQSDIVTHNV-TDGGE 303

Query: 61  GSSMSNMYQQQIHPS 75
           GSSMS M+Q Q+ PS
Sbjct: 304 GSSMSGMHQSQVPPS 318


>IMGA|Medtr4g107190.1 Winged helix repressor DNA-binding;
           chr04_pseudomolecule_IMGAG_V3 23341240-23345522 E
           EGN_Mt090430 20090702
          Length = 342

 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/74 (82%), Positives = 65/74 (87%), Gaps = 3/74 (4%)

Query: 1   TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKF--CERPQSDDMAPNIATDG 58
           TRPHATVEVEISEDMQLVHFDFNS+PFELHDDNYVLKAM F   ERPQSD++  NIA DG
Sbjct: 241 TRPHATVEVEISEDMQLVHFDFNSSPFELHDDNYVLKAMDFGGGERPQSDNVTHNIA-DG 299

Query: 59  GEGSSMSNMYQQQI 72
           GEGSSMS MYQ Q+
Sbjct: 300 GEGSSMSGMYQSQV 313


>IMGA|Medtr7g132600.1 Transcription factor E2F/dimerisation partner
           (TDP); chr07_pseudomolecule_IMGAG_V3 30727370-30721352 H
           EGN_Mt090430 20090702
          Length = 462

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 44/63 (69%), Gaps = 5/63 (7%)

Query: 17  LVHFDFNS----TPFELHDDNYVLKAMKFCERPQSDDMAPNIATDGGEGSSMSNMYQQQI 72
           +V F   S    T FELHDD YVLKAM+FC+RP+ D    N+ T+GGEGSS+S ++Q Q+
Sbjct: 236 VVQFCLGSSIVCTLFELHDDYYVLKAMEFCDRPRRDIATLNV-TEGGEGSSLSGLHQLQV 294

Query: 73  HPS 75
            PS
Sbjct: 295 PPS 297