Jatropha Genome Database

JcCB0114351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0114351.10 + phase: 0 /pseudo
         (404 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g038690.1 FAD-dependent pyridine nucleotide-disulphid...   106   2e-23
IMGA|Medtr8g137840.1 FAD-dependent pyridine nucleotide-disulphid...   104   7e-23

>IMGA|Medtr2g038690.1 FAD-dependent pyridine nucleotide-disulphide
           oxidoreductase chr02_pseudomolecule_IMGAG_V3
           10855937-10861933 E EGN_Mt090430 20090702
          Length = 568

 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 140/306 (45%), Gaps = 31/306 (10%)

Query: 5   SFTTPK-ITSPTLQSLCKKLPLAIPFSSSFLSLPKTLTSFPPRPLNLHHSLPNRRHF--- 60
           SF++P  I+ P   SL      A   +  F SL +   +F     +L H  P   H    
Sbjct: 9   SFSSPTTISGPHHCSLFNTTTTATSLTLRFCSLRREAFAFT----SLSHRSPRNHHLRLT 64

Query: 61  ---TVRADSDNGAEPARHYDFDLFTIGAGSGGVRVSRFAASFGASVAICELPFSTISSDT 117
               + A   N   P + +D+DL  IGAG GG   +  A   G   AI E        D 
Sbjct: 65  HLNAISAAISNNGTPPKSFDYDLLIIGAGVGGHGAALHAVEKGLKTAIVE-------GDV 117

Query: 118 TGGFGGTCVLRGCVPKKLLVYASKYSHDLDES---GGFGWKHETEPKHDWSTLMANKNAE 174
            GG   TCV RGCVP K L+  S    DL         G +  +   +D   +  + N  
Sbjct: 118 VGG---TCVNRGCVPSKALLAVSGRMRDLRNDHHLKSLGIQ-VSNAGYDRQAVADHANNL 173

Query: 175 LQRLTGIYKNMLNNAGVTLIEGRGKIVDPHTVDV--DGKLYSARHIVISVGGRPFIP--- 229
             ++ G   N +   GV ++ G G I+ P  V +     + +A+ I+I+ G  PF+P   
Sbjct: 174 ASKIRGNLTNSMKALGVDILTGFGTILGPQKVKIGSSNNVVTAKDIIIATGSVPFVPKGI 233

Query: 230 EIPGSEYVIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGF 289
           E+ G + VI SD AL L + P+ IAIVG GYI LEF+ ++  L S+V       +++ GF
Sbjct: 234 EVDG-KTVITSDHALKLETVPDWIAIVGSGYIGLEFSDVYTALGSEVTFVEALDQLMPGF 292

Query: 290 DEEVMK 295
           D E+ K
Sbjct: 293 DPEISK 298


>IMGA|Medtr8g137840.1 FAD-dependent pyridine nucleotide-disulphide
           oxidoreductase chr08_pseudomolecule_IMGAG_V3
           33095818-33103303 E EGN_Mt090430 20090702
          Length = 565

 Score =  104 bits (260), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 89/256 (34%), Positives = 122/256 (47%), Gaps = 29/256 (11%)

Query: 53  SLPNRRHFTV--RADSDNGAEPARHYDFDLFTIGAGSGGVRVSRFAASFGASVAICELPF 110
            LP R+H      A SDNG+     +D+DL  IGAG GG   +  A   G   AI E   
Sbjct: 56  QLPCRQHSATVSAARSDNGSTTGS-FDYDLLIIGAGVGGHGAALHAVEKGLKTAIVEGDV 114

Query: 111 STISSDTTGGFGGTCVLRGCVPKKLLVYAS------KYSHDLDESGGFGWKHETEPKHDW 164
                      GGTCV RGCVP K L+  S      K  H L   G     H +   +D 
Sbjct: 115 ----------VGGTCVNRGCVPSKALLAVSGRMRELKSDHHLKSLG----LHVSSSGYDR 160

Query: 165 STLMANKNAELQRLTGIYKNMLNNAGVTLIEGRGKIVDPHTVDV--DGKLYSARHIVISV 222
             +  + N    ++     N L   GV ++ G G I+ P  V +     + +A+ I+I+ 
Sbjct: 161 QGVADHANNLASKIRSNLTNSLKAIGVDILTGFGTILGPQKVKIGSSNNVVTAKDIIIAT 220

Query: 223 GGRPFIP---EIPGSEYVIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVF 279
           G  PF+P   E+ G + VI SD AL L S P+ IAIVG GYI LEF+ ++  L S+V   
Sbjct: 221 GSVPFVPKGVEVDG-KTVITSDHALKLESVPDWIAIVGSGYIGLEFSDVYTALGSEVTFV 279

Query: 280 IRQKKVLRGFDEEVMK 295
               +++ GFD E+ K
Sbjct: 280 EALDQLMPGFDPEISK 295