Jatropha Genome Database

JcCB0111501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0111501.20 + phase: 0 /pseudo
         (151 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g159510.1 Adaptin, N-terminal; AP2 clathrin adaptor, ...   281   1e-76
IMGA|Medtr4g095440.1 Adaptin, N-terminal; AP2 clathrin adaptor, ...   265   7e-72

>IMGA|Medtr3g159510.1 Adaptin, N-terminal; AP2 clathrin adaptor,
           alpha and beta chain, appendage; ; ;
           chr03_pseudomolecule_IMGAG_V3 41757228-41747971 E
           EGN_Mt090430 20090702
          Length = 887

 Score =  281 bits (718), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 134/145 (92%), Positives = 141/145 (97%)

Query: 1   MAQPLIKKDDDRDDEAEFSPFLGIEKGAVLQEARVFNDPQLDPRKCSQVITKLLYLLNQG 60
           MAQPL+KKDDDRDDEAE+SPF+GIEKGAVLQEARVFNDPQLD R+CSQVITKLLYLLNQG
Sbjct: 1   MAQPLVKKDDDRDDEAEYSPFMGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQG 60

Query: 61  ETFTKVEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMNSKSD 120
           ETFTK EATEVFFAVTKLFQS+D+GLRRMVYLMIKE+SPSADEVIIVTSSLMKDMNSK D
Sbjct: 61  ETFTKTEATEVFFAVTKLFQSKDMGLRRMVYLMIKEISPSADEVIIVTSSLMKDMNSKID 120

Query: 121 MYRANAIRVLCRITDGTLLTQIERY 145
           MYRANAIRVLCRITDGTLL QIERY
Sbjct: 121 MYRANAIRVLCRITDGTLLAQIERY 145


>IMGA|Medtr4g095440.1 Adaptin, N-terminal; AP2 clathrin adaptor,
           alpha and beta chain, appendage; ; ;
           chr04_pseudomolecule_IMGAG_V3 19859254-19866796 E
           EGN_Mt090430 20090702
          Length = 885

 Score =  265 bits (677), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 136/145 (93%), Positives = 142/145 (97%)

Query: 1   MAQPLIKKDDDRDDEAEFSPFLGIEKGAVLQEARVFNDPQLDPRKCSQVITKLLYLLNQG 60
           MAQPLIKKDDDRDDE  +SPFLGIEKGAVLQEARVFNDPQLD R+CSQVITKLLYLLNQG
Sbjct: 1   MAQPLIKKDDDRDDEDNYSPFLGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQG 60

Query: 61  ETFTKVEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMNSKSD 120
           ETFTKVEATEVFF+VTKLFQSRD+GLRRMVYL+IKELSPSADEVIIVTSSLMKDMNSK+D
Sbjct: 61  ETFTKVEATEVFFSVTKLFQSRDLGLRRMVYLIIKELSPSADEVIIVTSSLMKDMNSKTD 120

Query: 121 MYRANAIRVLCRITDGTLLTQIERY 145
           MYRANAIRVLCRITDGTLLTQIERY
Sbjct: 121 MYRANAIRVLCRITDGTLLTQIERY 145