Jatropha Genome Database

JcCB0110871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0110871.10 + phase: 0 /partial
         (315 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g105660.1 Peptidase C19, ubiquitin carboxyl-terminal ...   240   7e-64
IMGA|Medtr2g104710.1 Peptidase C19, ubiquitin carboxyl-terminal ...   194   5e-50
IMGA|Medtr8g121930.1 Peptidase C19, ubiquitin carboxyl-terminal ...    58   6e-09
IMGA|Medtr5g030130.1 Peptidase C19, ubiquitin carboxyl-terminal ...    56   2e-08
IMGA|Medtr5g030130.2 Peptidase C19, ubiquitin carboxyl-terminal ...    56   2e-08
IMGA|Medtr1g017060.1 Peptidase C19, ubiquitin carboxyl-terminal ...    52   5e-07
IMGA|AC235757_28.1 Ubiquitin; Peptidase C19, ubiquitin carboxyl-...    50   1e-06
IMGA|Medtr8g145470.1 Peptidase C19, ubiquitin carboxyl-terminal ...    50   2e-06
IMGA|Medtr3g105630.1 Peptidase C19, ubiquitin carboxyl-terminal ...    49   4e-06
IMGA|Medtr8g145470.2 Peptidase C19, ubiquitin carboxyl-terminal ...    48   6e-06

>IMGA|Medtr7g105660.1 Peptidase C19, ubiquitin carboxyl-terminal
           hydrolase 2; Ubiquitin carboxyl-terminal hydrolase,
           N-terminal region 2 chr07_pseudomolecule_IMGAG_V3
           24271300-24260562 E EGN_Mt090430 20090702
          Length = 912

 Score =  240 bits (612), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 133/273 (48%), Positives = 183/273 (67%), Gaps = 3/273 (1%)

Query: 1   RKMISQGAFTKKQFNVEVFPLSLKVIDSRDDCEFTIRLSKKASLHELYERVCTLRGIERD 60
           RK+IS G  ++ +F VEV+PL L+++    +   TIR+SKK ++ +L++R C +  +  D
Sbjct: 140 RKVISSG-LSQTEFAVEVYPLRLQLLVLTRNVRSTIRISKKETIGQLHKRACEIFDLLLD 198

Query: 61  KTIIWDYFNKHKNSRLVDSNRTLEESNLQMDQEILLELQVGVPYPSQSGKDSTGNELALV 120
           +  IWDY+   K++ + D ++TL++ NLQMDQ+IL+E+        ++G  S   E   V
Sbjct: 199 QVRIWDYYGHRKHALMNDMDKTLDDVNLQMDQDILVEVVNNTSSAQENG--SVHREANSV 256

Query: 121 TMEPSRTSLSIAGGPSLSNGHSSTYSLNLRPGSALNAGFTDIDLGFGAQTAVRRGERGGL 180
            +EP+++S+S AGG S S G S   ++       LN+   D +  +G      RG  GGL
Sbjct: 257 LVEPTKSSVSTAGGLSTSKGASRGNNVEYYSSQKLNSPVRDSENPYGTLGVTTRGSFGGL 316

Query: 181 AGLQNMGNTCFMNSALQCLVHTPPLAEYFLQDYSEEINTENPLGMHGELALAFGDLLRKL 240
            GL N+GNTCFMNSA+QCLVHTP  A YF +DY +EIN +NPLGM GELALAFG+LLRKL
Sbjct: 317 IGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYHQEINFQNPLGMVGELALAFGELLRKL 376

Query: 241 WSSGRSTIAPRAFKGKLALFAPQFSGYNQHDSQ 273
           W+ GR+ IAPR FK KLA FAPQFSG+NQHDSQ
Sbjct: 377 WAPGRTPIAPRPFKAKLARFAPQFSGHNQHDSQ 409


>IMGA|Medtr2g104710.1 Peptidase C19, ubiquitin carboxyl-terminal
           hydrolase 2; Ubiquitin carboxyl-terminal hydrolase,
           N-terminal region 2 chr02_pseudomolecule_IMGAG_V3
           24774924-24770365 H EGN_Mt090430 20090702
          Length = 437

 Score =  194 bits (493), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 116/267 (43%), Positives = 149/267 (55%), Gaps = 51/267 (19%)

Query: 17  EVFPLSLKVIDSRDDCEFTIRLSKKASLHELYERVCTLRGIERDKTIIWDY-------FN 69
           +V+PL L++   R+   F +R+SKK +  ELY+R C L  ++ +   I DY       F+
Sbjct: 138 DVYPLQLRLSVQRETNSFEVRISKKDNTVELYKRACKLFSVDSEMLRILDYSGHITLLFS 197

Query: 70  KHKNSRLVDSNRTLEESNLQMDQEILLELQV---GVPYPSQSGKDSTGNELALVTMEPSR 126
             +N    D  R       Q DQE LLELQV         + GK  +G+           
Sbjct: 198 DGENHVPTDFQR-------QSDQENLLELQVYGLSDSMRCREGKKDSGS----------- 239

Query: 127 TSLSIAGGPSLSNGHSSTYSLNLRPGSALNAGFTDIDLGFGAQTAVRRGERGGLAGLQNM 186
            S+ + G    +   S T+ L   PG A + G T                     GLQN+
Sbjct: 240 ASMKMNGTADCTRASSLTFCLG--PGEAGSLGLT---------------------GLQNL 276

Query: 187 GNTCFMNSALQCLVHTPPLAEYFLQDYSEEINTENPLGMHGELALAFGDLLRKLWSSGRS 246
           GNTCFMNS+LQCL HTP L +YFL+DYS EIN++NPLGM+GE+A AFGDLLRKLW+ G S
Sbjct: 277 GNTCFMNSSLQCLTHTPKLVDYFLEDYSREINSDNPLGMNGEIASAFGDLLRKLWAPGAS 336

Query: 247 TIAPRAFKGKLALFAPQFSGYNQHDSQ 273
            +APR FK KLA FAPQFSG+NQHDSQ
Sbjct: 337 PVAPRMFKSKLARFAPQFSGFNQHDSQ 363


>IMGA|Medtr8g121930.1 Peptidase C19, ubiquitin carboxyl-terminal
           hydrolase 2; Zinc finger, UBP-type
           chr08_pseudomolecule_IMGAG_V3 28386403-28382063 E
           EGN_Mt090430 20090702
          Length = 686

 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/34 (73%), Positives = 26/34 (76%)

Query: 179 GLAGLQNMGNTCFMNSALQCLVHTPPLAEYFLQD 212
           GL GL N+GNTCFMNS LQ L HTPPL  YFL D
Sbjct: 195 GLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSD 228


>IMGA|Medtr5g030130.1 Peptidase C19, ubiquitin carboxyl-terminal
           hydrolase 2 chr05_pseudomolecule_IMGAG_V3
           12623520-12620068 E EGN_Mt090430 20090702
          Length = 595

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 181 AGLQNMGNTCFMNSALQCLVHTPPLAEYFLQDYSEEINTENPLGMHGELALAFG---DLL 237
           AGL N+GNTCF+NS +QC  HT PL E  L      ++  +P   H    +       + 
Sbjct: 4   AGLANLGNTCFLNSIMQCFTHTVPLVEGLL------LSCHSPNDGHNGFCVICAFRYQMK 57

Query: 238 RKLWSSGRSTIAPRAFKGKLALFAPQFSGYNQHDSQ 273
           + L S+GR  I+P  F   L  F+  F  + Q D+ 
Sbjct: 58  QSLESTGR-VISPVVFVDNLKQFSSDFRRHQQEDAH 92


>IMGA|Medtr5g030130.2 Peptidase C19, ubiquitin carboxyl-terminal
           hydrolase 2 chr05_pseudomolecule_IMGAG_V3
           12623520-12620068 E EGN_Mt090430 20090702
          Length = 565

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 181 AGLQNMGNTCFMNSALQCLVHTPPLAEYFLQDYSEEINTENPLGMHGELALAFG---DLL 237
           AGL N+GNTCF+NS +QC  HT PL E  L      ++  +P   H    +       + 
Sbjct: 4   AGLANLGNTCFLNSIMQCFTHTVPLVEGLL------LSCHSPNDGHNGFCVICAFRYQMK 57

Query: 238 RKLWSSGRSTIAPRAFKGKLALFAPQFSGYNQHDSQ 273
           + L S+GR  I+P  F   L  F+  F  + Q D+ 
Sbjct: 58  QSLESTGR-VISPVVFVDNLKQFSSDFRRHQQEDAH 92


>IMGA|Medtr1g017060.1 Peptidase C19, ubiquitin carboxyl-terminal
           hydrolase 2; Zinc finger, UBP-type
           chr01_pseudomolecule_IMGAG_V3 3504174-3500953 E
           EGN_Mt090430 20090702
          Length = 688

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 43/95 (45%)

Query: 179 GLAGLQNMGNTCFMNSALQCLVHTPPLAEYFLQDYSEEINTENPLGMHGELALAFGDLLR 238
           GL GL ++G+TCFMNS LQ L+H PP  +YFL       + +        L      +  
Sbjct: 179 GLRGLNSLGSTCFMNSVLQALLHAPPFRDYFLSGGHSLEDCKRRTTERLCLICDINTVFS 238

Query: 239 KLWSSGRSTIAPRAFKGKLALFAPQFSGYNQHDSQ 273
            ++S  R+  +P  F       +   + Y Q D+ 
Sbjct: 239 AMYSGDRNPYSPAQFLYSWWQHSANLASYEQQDAH 273


>IMGA|AC235757_28.1 Ubiquitin; Peptidase C19, ubiquitin
           carboxyl-terminal hydrolase 2 AC235757.1 83788-89694 E
           EGN_Mt090430 20090702
          Length = 287

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 178 GGLAGLQNMGNTCFMNSALQCLVHTPPLAEYFLQDYSEEINTENPLGMHGELALAFGDLL 237
           G  AGL N+GNTC+MNS LQCL H+ P  +  L DYS    + +       L +A  DL 
Sbjct: 101 GHTAGLFNLGNTCYMNSTLQCL-HSVPELKSALIDYSHSGRSNDVDQTSHMLTVATRDLF 159

Query: 238 RKLWSSGRSTIAPRAFKGKLALFAPQF 264
            +L  S ++ +AP  F   L    PQF
Sbjct: 160 SELDKSVKA-VAPMQFWMVLRKKYPQF 185


>IMGA|Medtr8g145470.1 Peptidase C19, ubiquitin carboxyl-terminal
           hydrolase 2 chr08_pseudomolecule_IMGAG_V3
           35376912-35369257 E EGN_Mt090430 20090702
          Length = 855

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 181 AGLQNMGNTCFMNSALQCLVHTPPLAEYFLQDYSEEINTENPLGMHGELALAFGDLLRKL 240
           AGL N+GNTCF+NS LQCL +T PLA Y     S +  +   +     L      +   L
Sbjct: 92  AGLWNLGNTCFLNSVLQCLTYTEPLAAYL---QSGKHKSSCHIAGFCALCAIQNHVSCAL 148

Query: 241 WSSGRSTIAPRAFKGKLALFAPQFSGYNQHDSQ 273
            ++GR  ++P+   G L   +  F    Q D+ 
Sbjct: 149 QATGR-IVSPQDMVGNLRCISRNFRKARQEDAH 180


>IMGA|Medtr3g105630.1 Peptidase C19, ubiquitin carboxyl-terminal
           hydrolase 2; Zinc finger, UBP-type
           chr03_pseudomolecule_IMGAG_V3 26469354-26465494 E
           EGN_Mt090430 20090702
          Length = 1070

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 37/133 (27%)

Query: 161 DIDLGFGAQTA-VRRGE--------RGG--LAGLQNMGNTCFMNSALQCLVHTPPLAEYF 209
           D+ +G G+ T+ ++ G         +GG  + G+ N+GNTCF NS +Q L+    L + F
Sbjct: 200 DVSIGDGSVTSEIKLGSLSTSGSYGQGGYVVRGMVNLGNTCFFNSIMQNLLAMNKLRDNF 259

Query: 210 LQDYSEEINTENPLGMHGELALAFGDL---LRKLWS-----SG-RSTIAPRAFKGKLALF 260
           L+                 +    G L   L+KL++     SG ++ I PR+F G +   
Sbjct: 260 LR-----------------VDAFVGPLISSLKKLFTETNPESGFKNIINPRSFFGCVCSK 302

Query: 261 APQFSGYNQHDSQ 273
           +PQF GY QHDS 
Sbjct: 303 SPQFRGYQQHDSH 315


>IMGA|Medtr8g145470.2 Peptidase C19, ubiquitin carboxyl-terminal
           hydrolase 2 chr08_pseudomolecule_IMGAG_V3
           35376912-35375307 E EGN_Mt090430 20090702
          Length = 224

 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 150 RPGSALNAGFTDIDLGFGAQTAVRRGERGGLAGLQNMGNTCFMNSALQCLVHTPPLAEY 208
           +P  + N+ F++   G   + ++    R   AGL N+GNTCF+NS LQCL +T PLA Y
Sbjct: 63  QPQPSKNSEFSE--FGLDPELSLGITFRRIGAGLWNLGNTCFLNSVLQCLTYTEPLAAY 119