Jatropha Genome Database

JcCB0110731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0110731.10 + phase: 0 /partial
         (503 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g106000.1 ; chr03_pseudomolecule_IMGAG_V3 26630653-26...   491   e-139
IMGA|Medtr3g105990.1 Breast cancer type 2 susceptibility protein...    82   6e-16

>IMGA|Medtr3g106000.1 ; chr03_pseudomolecule_IMGAG_V3
           26630653-26626568 E EGN_Mt090430 20090702
          Length = 911

 Score =  491 bits (1263), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 250/446 (56%), Positives = 315/446 (70%), Gaps = 10/446 (2%)

Query: 1   DAVDDEKFGGLNNTISSIQKPLSNGSSGLDMLDDNSSAIGNGLRINTLARSSRGPLVDIS 60
           D V +E   G  ++I+  QKPL N +   D    +SS  G   R+++  +     LVDIS
Sbjct: 472 DDVVNESDCGCKSSITPGQKPLYNKNEVADTTIKSSSLNGFSSRMDSREKPLGRALVDIS 531

Query: 61  NTLGTSCTNHRRVNNEKRKLGRGTSISQFKRPRSSKFIIPLNKNVSYVLNGLSTSSSENS 120
           NT+ T  TNH++  + KR++G   ++S FK+PR S       ++V Y  N L+  SS  S
Sbjct: 532 NTIKTVHTNHKQPASGKRRIGLHATVSSFKKPRISNISASGGQDVQYFSNDLAQLSSGAS 591

Query: 121 CCRRTVSTRYPFRTPRMYIKEYFEVPSSDKNMLEHFTDQVGWIKPEAAEKYKFCDESGVN 180
             +R VSTRYPF  PRMYIK+YF VP  ++ +  +F +    +    A  Y F D S  N
Sbjct: 592 GFKRKVSTRYPFHHPRMYIKDYFAVPPLEQKV--NFPNPARQVTSCNAGAYIFHDGSDSN 649

Query: 181 CIGAEALYHMLVQSGASIQCVSKEWTMNHYKWIIWKLACYERCYPWKSATRFLTVSNVHE 240
            +GAEA  H+L Q GAS++  SKEW +NHYKWI+WKLACYERCYP + A +FLTVSNV E
Sbjct: 650 DMGAEAFIHLLTQHGASLRFASKEWVLNHYKWIVWKLACYERCYPARCAGKFLTVSNVLE 709

Query: 241 ELKYRYEREVNHGHRSAIKRILEGDSPPSSMMVLCISAICISCKPKIENLALN----GDE 296
           ELKYRYEREVNHGHRS IK+ILEGD  PSSMM LCIS+  I     +++ AL+    G++
Sbjct: 710 ELKYRYEREVNHGHRSTIKKILEGDGLPSSMMTLCISS--IHSDHVLDSGALSEPQTGNQ 767

Query: 297 CSNAARMELTDGWYSIDALLDIPLSKQLSAGKLFVGQKIRIWGARLCGWAGPVSPLEILA 356
            + A ++ELTDGWYSI+A+LD+PLSKQL+AG+LFVGQK+RIWGA LCGW GPVSPLE+  
Sbjct: 768 SNEALKVELTDGWYSINAILDVPLSKQLAAGRLFVGQKLRIWGAGLCGWNGPVSPLEV-- 825

Query: 357 SRTVSLLLHINGTYRAHWADRLGFCKGVGPPLAFRCIKNNGGPIPRTLVGVTRIYPILYK 416
           S TVSLLLHINGTYRAHWADRLG CK  GPPLAF+CIK NGG +P+TL G+TRIYPILYK
Sbjct: 826 SSTVSLLLHINGTYRAHWADRLGLCKVAGPPLAFKCIKRNGGLVPQTLAGITRIYPILYK 885

Query: 417 EKLRDGGSIVRSERMEARTMQLYNQR 442
           E+L  G S+V SERME + M+L+NQR
Sbjct: 886 ERLSSGRSVVISERMENKMMELHNQR 911


>IMGA|Medtr3g105990.1 Breast cancer type 2 susceptibility protein
           chr03_pseudomolecule_IMGAG_V3 26625163-26623202 H
           EGN_Mt090430 20090702
          Length = 353

 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 55/69 (79%), Gaps = 3/69 (4%)

Query: 437 QLYNQRHSAVVEGIVSEYQRK--GSHIYNDSDSEEGAKILKILETAADPEVIMAEMSPEQ 494
            LY  R SAVV+ IVSEYQ++  GSHIY D  + EGAKI K+LETAA+PE +MA+M+PEQ
Sbjct: 10  HLYGVRRSAVVDNIVSEYQKEMTGSHIY-DYGNSEGAKIYKMLETAAEPEFLMADMTPEQ 68

Query: 495 LNSFASCQA 503
           L+SFA+ +A
Sbjct: 69  LSSFAAYKA 77