Jatropha Genome Database

JcCB0109661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0109661.10 - phase: 0 
         (139 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g111620.1 hypothetical protein chr07_pseudomolecule_I...   107   2e-24
IMGA|Medtr2g118100.1 hypothetical protein chr02_pseudomolecule_I...   105   7e-24

>IMGA|Medtr7g111620.1 hypothetical protein
           chr07_pseudomolecule_IMGAG_V3 26283327-26281148 E
           EGN_Mt090430 20090702
          Length = 136

 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/138 (47%), Positives = 82/138 (59%), Gaps = 3/138 (2%)

Query: 1   MGRGRGKGKKQTVIASHEDPSIGEDDQVPAYKRRGRPTKPLXXXXXXXXXXXXXXXXXXX 60
           MGRGRGKGKKQ+ I   ED    EDD+VPA+++RGRP KP+                   
Sbjct: 1   MGRGRGKGKKQSAIV--EDFVSDEDDKVPAHRKRGRPLKPVTDENEEVEATEKIEKDEEN 58

Query: 61  XVNDSISNKDAKSLAATENGQKRKRPGHTSENADSVKEENDVRTKLSTDNSAVSGRFQQN 120
            VN ++SN D K+   T N +KRKR     E  + +KEEN VR K S  +S  S  F+QN
Sbjct: 59  -VNGNVSNGDLKTQVITVNKRKRKRSSQVKEKIEPMKEENGVRAKSSPGDSVKSTGFRQN 117

Query: 121 GSRRKNKPRRAAEAVVEC 138
           GSRRK+KP RAAEA V+C
Sbjct: 118 GSRRKSKPHRAAEAGVDC 135


>IMGA|Medtr2g118100.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 27941558-27939309 F
           EGN_Mt090430 20090702
          Length = 134

 Score =  105 bits (262), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/139 (46%), Positives = 83/139 (59%), Gaps = 5/139 (3%)

Query: 1   MGRGRGKGKKQTVIASHEDPSIGEDDQVPAYKRRGRPTKPLXXXXXXXXXXXXXXXXXXX 60
           MGRGRGKGKK TV  +H+D   GED++VP  K+RGRP KP+                   
Sbjct: 1   MGRGRGKGKKPTVT-NHDDTVSGEDEKVPIQKKRGRPQKPVKDDFDEEVEKIDDSEN--- 56

Query: 61  XVNDSISNKDAKSLAATENGQKRKRPGHTSENADSVKEENDVRTKLSTDNSAVSGRFQQN 120
            V + ++NK+ KS  A E  +KRKR     E  DS +EEN V ++ ST+ SA S  F+ N
Sbjct: 57  -VKNGVTNKEMKSPTAAELARKRKRNSQVKEKLDSAEEENGVGSRSSTEESAKSNGFRHN 115

Query: 121 GSRRKNKPRRAAEAVVECM 139
           GSRRK+ PRRAAEA V+C 
Sbjct: 116 GSRRKSTPRRAAEAGVQCQ 134