Jatropha Genome Database

JcCB0109281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0109281.10 - phase: 0 
         (237 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g025600.1 Nuclear pore protein 84/107 chr08_pseudomol...   254   4e-68

>IMGA|Medtr8g025600.1 Nuclear pore protein 84/107
           chr08_pseudomolecule_IMGAG_V3 5243683-5238836 H
           EGN_Mt090430 20090702
          Length = 286

 Score =  254 bits (648), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 133/220 (60%), Positives = 159/220 (72%), Gaps = 12/220 (5%)

Query: 1   METSPSYFDPEDLTSREQFRRYGKRHSTSSVSPHKDISVSKFKESRLLYEGQSIHSPTNA 60
           M     +FDP+DLT+RE+FRRYGKRH  S  S  +D S SK  ES L Y+GQ+IHSPTNA
Sbjct: 5   MAMDSPFFDPQDLTTREKFRRYGKRHLNSGASVEQDYSASKLSESGLFYDGQNIHSPTNA 64

Query: 61  ALLLENIKQETDSIG--YTDHFGGTPARTHSTFKRRSSIDSYGISEVDLGADSVRRHGSE 118
           AL+LENIKQE +S+   Y D       ++  + ++RSS D  GI  +D G DSVR     
Sbjct: 65  ALILENIKQEVESLDADYLDD------KSLYSSRKRSSADVPGIPGMDDGFDSVRY---- 114

Query: 119 SLKACKIEDDSLTDIGETIFGLFASLLDSAIQGLMPIPDLILRFEKSCRDVSESIRYGPK 178
           SLKACK E DSL D  + IF  FASL D+++ G+MPIPDLILRFE  CR+VSESIRYG  
Sbjct: 115 SLKACKQEGDSLGDDADNIFNSFASLFDTSLTGMMPIPDLILRFENECRNVSESIRYGLN 174

Query: 179 IRHRVVEDKLMRQKAQLLLDEAASWSLLWYLYGKGNQSLS 218
           IRHRVVEDKLMRQKAQLLLDEAA+WSLLW+LYG+  + LS
Sbjct: 175 IRHRVVEDKLMRQKAQLLLDEAATWSLLWFLYGEETEELS 214