Jatropha Genome Database

JcCB0107551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0107551.10 - phase: 0 /partial
         (165 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g111270.1 Homoserine dehydrogenase chr03_pseudomolecu...   223   4e-59

>IMGA|Medtr3g111270.1 Homoserine dehydrogenase
           chr03_pseudomolecule_IMGAG_V3 28220584-28225725 F
           EGN_Mt090430 20090702
          Length = 376

 Score =  223 bits (567), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 106/165 (64%), Positives = 134/165 (81%)

Query: 1   MKSIPLILMGCGGVGRQLIQHIVSCRSLHAKQGVHLRVVGVCDSKSLVAASDVFTRELND 60
           MK+IPLILMGCGGVG  L+QHIVS RSLH+ QG+ LRVVG+ DSKSLV   D+  +  +D
Sbjct: 1   MKTIPLILMGCGGVGSHLLQHIVSSRSLHSSQGLCLRVVGIGDSKSLVVVDDLLNKGFDD 60

Query: 61  AFLSEVCRVKLNGSSLSTLADFDECLVYSNSESKRKVIDIAALLGKSTGLAFVDCSASSE 120
           +FL E+CR+K  G SLS L D  +C V+ + ES+ K+++IA+ LGK TGLAFVDC+ASS+
Sbjct: 61  SFLLELCRLKHGGESLSKLGDLGQCQVFVHPESEGKILEIASQLGKKTGLAFVDCTASSD 120

Query: 121 TIGVLNQVVDLRCCIVLANKKPLTSTLEDYDKLVSYPRRIRHEST 165
           TI VL QVVDL CC+V+ANKKPLTST+ D++KL++YPRRIRHEST
Sbjct: 121 TIVVLKQVVDLGCCVVMANKKPLTSTMGDFEKLLTYPRRIRHEST 165