Jatropha Genome Database

JcCB0107371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0107371.10 + phase: 0 /partial
         (116 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g096210.1 Thymidylate synthase chr04_pseudomolecule_I...   178   7e-46
IMGA|Medtr3g162670.1 Thymidylate synthase chr03_pseudomolecule_I...   176   3e-45
IMGA|Medtr3g162670.2 Thymidylate synthase chr03_pseudomolecule_I...    82   7e-17

>IMGA|Medtr4g096210.1 Thymidylate synthase
           chr04_pseudomolecule_IMGAG_V3 20179513-20174873 E
           EGN_Mt090430 20090702
          Length = 524

 Score =  178 bits (451), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 83/109 (76%), Positives = 92/109 (84%)

Query: 8   NGELSCQMYQRSADMGLGVPFNIASYALLTCIVSHVCDLVPGDFVHVLGDAHVYRTHVRX 67
           NGELSCQMYQRSADMGLGVPFNIASYALLT +++HVCDLVPGD +HV+GDAHVYR HV+ 
Sbjct: 416 NGELSCQMYQRSADMGLGVPFNIASYALLTYMIAHVCDLVPGDLIHVIGDAHVYRNHVKP 475

Query: 68  XXXXXXXXXXXXXILKINPEKKNIDSFVAADFKLIGYDPHQKIEMKMAI 116
                        ILKINP+KK+IDSFVAADFKLIGYDPHQKIEMKMA+
Sbjct: 476 LQEQLQNLPKPFPILKINPKKKDIDSFVAADFKLIGYDPHQKIEMKMAV 524


>IMGA|Medtr3g162670.1 Thymidylate synthase
           chr03_pseudomolecule_IMGAG_V3 42524537-42519915 E
           EGN_Mt090430 20090702
          Length = 582

 Score =  176 bits (445), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 80/109 (73%), Positives = 91/109 (83%)

Query: 8   NGELSCQMYQRSADMGLGVPFNIASYALLTCIVSHVCDLVPGDFVHVLGDAHVYRTHVRX 67
           NGELSCQMYQRSADMGLGVPFNIASYALLTC+++H+C+LVPGDF+H +GDAHVY+THVR 
Sbjct: 474 NGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHICELVPGDFIHAIGDAHVYQTHVRP 533

Query: 68  XXXXXXXXXXXXXILKINPEKKNIDSFVAADFKLIGYDPHQKIEMKMAI 116
                         LKINP+KK+IDSFVA DFKLI YDPHQKIEMKMA+
Sbjct: 534 LQEQLHNLPKPFPTLKINPKKKDIDSFVATDFKLIDYDPHQKIEMKMAV 582


>IMGA|Medtr3g162670.2 Thymidylate synthase
           chr03_pseudomolecule_IMGAG_V3 42524537-42519915 E
           EGN_Mt090430 20090702
          Length = 517

 Score = 82.0 bits (201), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/37 (89%), Positives = 37/37 (100%)

Query: 8   NGELSCQMYQRSADMGLGVPFNIASYALLTCIVSHVC 44
           NGELSCQMYQRSADMGLGVPFNIASYALLTC+++H+C
Sbjct: 474 NGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHIC 510