Jatropha Genome Database

JcCB0106871.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0106871.20 - phase: 0 /partial
         (89 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g164080.1 Glycosyl transferase, family 13 chr03_pseud...   159   3e-40

>IMGA|Medtr3g164080.1 Glycosyl transferase, family 13
           chr03_pseudomolecule_IMGAG_V3 43221066-43228664 F
           EGN_Mt090430 20090702
          Length = 286

 Score =  159 bits (403), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 77/89 (86%), Positives = 81/89 (91%)

Query: 1   HLDSQLVYPERPGELIAYYKIARHYKWALDQLFYKHNFSRVIILEDDMEIAPDFFNYFEA 60
           HLD + V  ERPGELIAYYKIARHYKWAL QLF KHNF+RVIILEDDMEIAPDFF+YFEA
Sbjct: 165 HLDFEPVQTERPGELIAYYKIARHYKWALGQLFDKHNFNRVIILEDDMEIAPDFFDYFEA 224

Query: 61  AADLLDKDKSIMAVSSWNDNGQKQFVYDP 89
            A LLDKDKSIMAVSSWNDNGQKQFV+DP
Sbjct: 225 MATLLDKDKSIMAVSSWNDNGQKQFVHDP 253