Jatropha Genome Database

JcCB0106871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0106871.10 + phase: 0 /pseudo/partial
         (219 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g137480.1 Ribose 5-phosphate isomerase chr01_pseudomo...   155   2e-38
IMGA|Medtr7g140770.1 Ribose 5-phosphate isomerase chr07_pseudomo...   127   3e-30

>IMGA|Medtr1g137480.1 Ribose 5-phosphate isomerase
           chr01_pseudomolecule_IMGAG_V3 30487780-30484981 E
           EGN_Mt090430 20090702
          Length = 268

 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/175 (50%), Positives = 111/175 (63%), Gaps = 21/175 (12%)

Query: 1   DELKKIAAYEVVDFVQSGIVLGLSADSTTKYVIDRIANLLEXXXXXXNSIGIPTSKKTHQ 60
           D+LKKIAAY+ V++V+SG+VLGL   ST K+ + RI  L+       N IGIPTS  TH+
Sbjct: 37  DDLKKIAAYKAVEYVESGMVLGLGTGSTAKHAVARIGELIRQGKLK-NIIGIPTSTITHE 95

Query: 61  HALPLGIPLSDLDSHPNVDLDTENTDKVDSYLNLMKGRGGSLLREKMIE--------ILL 112
            A+ LGIPLSDLDSHP +DL  +  D+VD YLNL+KGRGGSLLREKM+E        I+ 
Sbjct: 96  QAVSLGIPLSDLDSHPVIDLAIDGADEVDPYLNLVKGRGGSLLREKMVEGACKKFVCIVD 155

Query: 113 TSQ--NWFLILELIKPAETLPFCWKFT--------QERCLVAKLRRNGDSKNGEP 157
            S+  N+     L  P E + FCWKFT        +E   VAKLR +G+   GEP
Sbjct: 156 ESKLVNYLGGSGLAMPVEVIRFCWKFTAGRLQNLFEESGCVAKLRTSGE--KGEP 208


>IMGA|Medtr7g140770.1 Ribose 5-phosphate isomerase
           chr07_pseudomolecule_IMGAG_V3 33954296-33953176 E
           EGN_Mt090430 20090702
          Length = 280

 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/177 (40%), Positives = 107/177 (60%), Gaps = 26/177 (14%)

Query: 1   DELKKIAAYEVVDFVQSGIVLGLSADSTTKYVIDRIANLLEXXXXXXNSIGIPTSKKTHQ 60
           D+LKK+AA + V++V+SG+VLGL   ST  +V+ ++  LL       N IG+PTSK+T +
Sbjct: 50  DDLKKLAADKAVEYVKSGMVLGLGTGSTAAFVVSKLGELLNSGELT-NIIGVPTSKRTEE 108

Query: 61  HALPLGIPLSDLDSHPNVDLDTENTDKVDSYLNLMKGRGGSLLREKMIEILLTSQNWFLI 120
            A  LGIPLS LD +P +DL  +  D+VD +LNL+KGRGG+LLREKM+E    S  + ++
Sbjct: 109 QARSLGIPLSVLDDNPRLDLAIDGADEVDPFLNLVKGRGGALLREKMVEA--ASDKFVVV 166

Query: 121 LE------------LIKPAETLPFCWKFT--------QERCLVAKLRRNGDSKNGEP 157
           ++            L  P E + FCWK+         +E  + AKLR +   ++G+P
Sbjct: 167 VDDTKLVSGLGGSGLAMPVEVVQFCWKYNLIRLQELFKEEGVDAKLRVD---ESGKP 220