Jatropha Genome Database

JcCB0103991.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0103991.20 - phase: 1 /partial
         (96 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g086040.1 Protein of unknown function DUF593 chr05_ps...    52   7e-08

>IMGA|Medtr5g086040.1 Protein of unknown function DUF593
           chr05_pseudomolecule_IMGAG_V3 32959672-32963368 E
           EGN_Mt090430 20090702
          Length = 986

 Score = 52.0 bits (123), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 38  EVSDLNERLKALEADRIFLEHSMNSIR-GGQEGVQFVQEIAFHLKELRRIGIR 89
           EV  + +RL+ALE DR FL+H M SI+ GG EG   +QEI  HL++L+ + +R
Sbjct: 913 EVDRVYDRLQALETDREFLQHCMGSIQNGGDEGKDLLQEILQHLRDLKNVELR 965