Jatropha Genome Database

JcCB0102421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0102421.10 - phase: 0 /partial
         (162 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g034380.1 dTDP-4-dehydrorhamnose reductase chr08_pseu...   202   7e-53

>IMGA|Medtr8g034380.1 dTDP-4-dehydrorhamnose reductase
           chr08_pseudomolecule_IMGAG_V3 7402473-7406084 E
           EGN_Mt090430 20090702
          Length = 317

 Score =  202 bits (513), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 101/159 (63%), Positives = 117/159 (73%), Gaps = 3/159 (1%)

Query: 4   KNRVLVIGGTGYLGQHLLQGLSEIKERPFDIAFTYHXXXXXXXXXXXXXXHSRSFRVDIK 63
           K ++L++GGTGYLGQHLLQ  S    +   +AFTYH               S+SF+VD+K
Sbjct: 3   KKKILIVGGTGYLGQHLLQ--SYYSNQSLTVAFTYHSSPLLQPLLDAFP-DSQSFQVDLK 59

Query: 64  TGEGFQTISYEFGQPDVVVNCAAISVPRACEMDPTAAMSINVPCSLVNWLSSFELNKTLL 123
           +G GF  IS  FGQPDVVVNCAAISVPRACE DP  A +INVP SLV WL SF+ N TLL
Sbjct: 60  SGIGFDAISNAFGQPDVVVNCAAISVPRACENDPDTANAINVPSSLVKWLQSFKQNSTLL 119

Query: 124 IHLSTDQVYEGMKSFYKEEDENVPVNVYGKSKLAAEQFI 162
           IHLSTDQVYEG KSFYKEED  +PVNVYGK+K+AAE+FI
Sbjct: 120 IHLSTDQVYEGEKSFYKEEDIPIPVNVYGKTKVAAEKFI 158