Jatropha Genome Database

JcCB0102141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0102141.10 - phase: 0 /partial
         (158 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g103750.1 Immunoglobulin/major histocompatibility com...    62   1e-10
IMGA|AC235022_9.1 Tudor AC235022.1 50838-49664 E EGN_Mt090430 20...    50   5e-07
IMGA|AC235022_8.1 hypothetical protein AC235022.1 44700-44221 H ...    46   9e-06

>IMGA|Medtr4g103750.1 Immunoglobulin/major histocompatibility
           complex; DDT; Zinc finger, FYVE/PHD-type
           chr04_pseudomolecule_IMGAG_V3 22426782-22432803 E
           EGN_Mt090430 20090702
          Length = 1274

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 43/62 (69%), Gaps = 1/62 (1%)

Query: 1   MEFIGRIVDKEFKGYGVYSGVVQSYDPSSGFFEIVYEDGDSEELDFSEVVSLLE-RKEAV 59
           MEF+G+ + K     G+ +G V+S++ SSG  EIV+EDG  EE++ SEVVSLLE + E V
Sbjct: 101 MEFVGKTIQKSVDDGGILTGTVKSHNSSSGLLEIVFEDGHCEEMEVSEVVSLLEIQPEVV 160

Query: 60  PV 61
            V
Sbjct: 161 KV 162


>IMGA|AC235022_9.1 Tudor AC235022.1 50838-49664 E EGN_Mt090430
           20090702
          Length = 163

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 3   FIGRIVDKEFKGYGVYSGVVQSYDPSSGFFEIVYEDGDSEELDF---SEVVSLLE 54
           F+GR V K F G   YSG V  YD  SG++ + YEDGDSE+LD+    EV+S LE
Sbjct: 67  FVGRDVQKLFMGR-YYSGRVTEYDMESGWYHVEYEDGDSEDLDWLELKEVLSPLE 120


>IMGA|AC235022_8.1 hypothetical protein AC235022.1 44700-44221 H
           EGN_Mt090430 20090702
          Length = 159

 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 3   FIGRIVDKEFKGYGVYSGVVQSYDPSSGFFEIVYEDGDSEELDFSEVVSLL 53
           F+GR V K F+    YSG V +YD  SG +++ YEDGD E+LD+ E+  +L
Sbjct: 63  FVGRDVQKLFRER-YYSGKVINYDKESGLYKVQYEDGDLEDLDWPELKEVL 112