Jatropha Genome Database

JcCB0101331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0101331.10 + phase: 0 
         (103 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g089430.2 Checkpoint protein Rad24 chr08_pseudomolecu...   103   3e-23
IMGA|Medtr8g089430.1 Checkpoint protein Rad24 chr08_pseudomolecu...   102   4e-23

>IMGA|Medtr8g089430.2 Checkpoint protein Rad24
           chr08_pseudomolecule_IMGAG_V3 19216485-19221333 E
           EGN_Mt090430 20090702
          Length = 291

 Score =  103 bits (256), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/100 (53%), Positives = 69/100 (69%), Gaps = 8/100 (8%)

Query: 2   QIRFPCEDFDDLFMGPRANWKGTHGPGSARSEIKELWIDKYKPRSLEELAVHKKKVEGVK 61
           +I    +DF+ +F G +         G+ RS  +ELW+DKYKP SLEELAVHKKKVE VK
Sbjct: 62  EINLFDDDFNQVFTGSKV----FAAAGTQRSTAEELWVDKYKPHSLEELAVHKKKVEEVK 117

Query: 62  IWFEERLRASKEKIENNVLVITGQAGVGKSVSFCSAVHML 101
            WFEERL+ SK    NNVLV++GQAG+GKS    +A+H++
Sbjct: 118 TWFEERLKPSKGVYRNNVLVVSGQAGIGKS----AAIHVI 153


>IMGA|Medtr8g089430.1 Checkpoint protein Rad24
           chr08_pseudomolecule_IMGAG_V3 19216485-19222914 E
           EGN_Mt090430 20090702
          Length = 604

 Score =  102 bits (254), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/100 (53%), Positives = 69/100 (69%), Gaps = 8/100 (8%)

Query: 2   QIRFPCEDFDDLFMGPRANWKGTHGPGSARSEIKELWIDKYKPRSLEELAVHKKKVEGVK 61
           +I    +DF+ +F G +         G+ RS  +ELW+DKYKP SLEELAVHKKKVE VK
Sbjct: 62  EINLFDDDFNQVFTGSKV----FAAAGTQRSTAEELWVDKYKPHSLEELAVHKKKVEEVK 117

Query: 62  IWFEERLRASKEKIENNVLVITGQAGVGKSVSFCSAVHML 101
            WFEERL+ SK    NNVLV++GQAG+GKS    +A+H++
Sbjct: 118 TWFEERLKPSKGVYRNNVLVVSGQAGIGKS----AAIHVI 153