Jatropha Genome Database

JcCB0101051.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0101051.30 - phase: 0 
         (230 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g150780.1 hypothetical protein chr03_pseudomolecule_I...    69   2e-12

>IMGA|Medtr3g150780.1 hypothetical protein
           chr03_pseudomolecule_IMGAG_V3 39782380-39784081 E
           EGN_Mt090430 20090702
          Length = 249

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 78/143 (54%), Gaps = 25/143 (17%)

Query: 11  LKQQYKHLQQEWDSIKNSKPRTLRRSATD----SRTILKGLKLFDN----SPRKLMSSLQ 62
           L Q+YK L+Q+W++ K S+  T R+  +     ++ I + L L  N    SPR+LM SLQ
Sbjct: 37  LHQKYKKLEQDWNAFKESRSTTSRKYRSPLNIATKPIFQNLGLEINNSIISPRELMFSLQ 96

Query: 63  HTRSSLDNGEWKVRDNDLAVVEILRERRAAIQSGKLKGRRRLFNDAEEGDFVEETEMRSI 122
              SS +   WK  ++D+A  E L+ERR AI+ GKLKG RRLF+   E +          
Sbjct: 97  RDSSSSEEETWK--NHDVAARETLQERREAIERGKLKG-RRLFDSTMESE---------- 143

Query: 123 FSYDSDN---ENQSVQNNQLCPL 142
            S D+DN   +N  V++   C L
Sbjct: 144 -SDDNDNNIGQNYEVRSMSFCYL 165