Jatropha Genome Database

JcCB0101051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0101051.10 + phase: 2 /partial
         (161 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g048590.1 Alpha-1,4-glucan-protein synthase (UDP-form...   296   3e-81
IMGA|Medtr7g089260.1 Alpha-1,4-glucan-protein synthase (UDP-form...   172   9e-44

>IMGA|Medtr5g048590.1 Alpha-1,4-glucan-protein synthase
           (UDP-forming) chr05_pseudomolecule_IMGAG_V3
           20550596-20553315 F EGN_Mt090430 20090702
          Length = 362

 Score =  296 bits (758), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 137/159 (86%), Positives = 148/159 (93%)

Query: 3   RYVDVVLTIPKGTLFPMCGMNLAFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCAKVIC 62
           R+VD V+TIPKGTLFPMCGMNLAF+RELIGPAMYFGLMGDGQPIGRYDDMWAGWC KVIC
Sbjct: 191 RFVDAVMTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVIC 250

Query: 63  DHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEDIIPFFQSVVLPKECTNVVKCYI 122
           DHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGI+WQE+IIPFFQ+  L K+CT+V KCYI
Sbjct: 251 DHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQAATLSKDCTSVQKCYI 310

Query: 123 ELSKLVKEKLGTIDPYFHKLGDAMVTWIEAWVELNSPAQ 161
           ELSK VKEKLGTIDPYF KL DAMVTWIEAW E+N+ A+
Sbjct: 311 ELSKQVKEKLGTIDPYFVKLADAMVTWIEAWDEINNSAE 349


>IMGA|Medtr7g089260.1 Alpha-1,4-glucan-protein synthase
           (UDP-forming) chr07_pseudomolecule_IMGAG_V3
           19564226-19562669 F EGN_Mt090430 20090702
          Length = 347

 Score =  172 bits (435), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 77/159 (48%), Positives = 109/159 (68%), Gaps = 3/159 (1%)

Query: 3   RYVDVVLTIPKGTLFPMCGMNLAFNRELIGPAMYFGLMGDGQPIGRYD---DMWAGWCAK 59
           RYVD VLT+P   + P+ G+N+AFNREL+GPA+   L+  G+   R++   D+W G C K
Sbjct: 188 RYVDAVLTVPTRAMLPVSGINIAFNRELVGPALVPALVLAGEGKLRWETVEDIWCGLCVK 247

Query: 60  VICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEDIIPFFQSVVLPKECTNVVK 119
           ++CDHL LGVK+GLPY+W ++  N   +LKKE++G+   ED++PFFQSV LP+  T    
Sbjct: 248 IVCDHLSLGVKSGLPYVWRNERGNAIDSLKKEWEGVKLMEDVVPFFQSVKLPQSATTAED 307

Query: 120 CYIELSKLVKEKLGTIDPYFHKLGDAMVTWIEAWVELNS 158
           C IE++K VKE+LG +DP F K  DAM  W++ W  + S
Sbjct: 308 CVIEMAKSVKEQLGKVDPMFLKAADAMAEWVKLWKSVGS 346