Jatropha Genome Database

JcCB0100521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0100521.10 - phase: 0 /partial
         (107 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g093600.2 Zinc finger, C2H2-type chr08_pseudomolecule...   124   1e-29
IMGA|Medtr8g093600.1 Zinc finger, C2H2-type chr08_pseudomolecule...   124   1e-29

>IMGA|Medtr8g093600.2 Zinc finger, C2H2-type
           chr08_pseudomolecule_IMGAG_V3 20629417-20632618 F
           EGN_Mt090430 20090702
          Length = 517

 Score =  124 bits (310), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/107 (62%), Positives = 77/107 (71%), Gaps = 3/107 (2%)

Query: 4   QQDNMQWGHRQIEPENTS-VTAGLGLGLPCDGGSGLKELMMGTPSVFGPKQTTLDFXXXX 62
           QQD++ WG   +EPE +S V+AGLGLGLPCD  SGLKELM+GTPS+FGPKQTTLDF    
Sbjct: 411 QQDSLHWGLGPMEPEGSSLVSAGLGLGLPCDADSGLKELMLGTPSMFGPKQTTLDFLGLG 470

Query: 63  XXXXXXXXXXXXXXITSI--GSGMDVAAAAASFGGGEYSGKDLGRSS 107
                         ITSI  GSG+DV AAAASFG GE+SGKD+GRSS
Sbjct: 471 MAAGGSAGGGLSALITSIGGGSGLDVTAAAASFGNGEFSGKDIGRSS 517


>IMGA|Medtr8g093600.1 Zinc finger, C2H2-type
           chr08_pseudomolecule_IMGAG_V3 20629417-20632618 F
           EGN_Mt090430 20090702
          Length = 519

 Score =  124 bits (310), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/107 (62%), Positives = 77/107 (71%), Gaps = 3/107 (2%)

Query: 4   QQDNMQWGHRQIEPENTS-VTAGLGLGLPCDGGSGLKELMMGTPSVFGPKQTTLDFXXXX 62
           QQD++ WG   +EPE +S V+AGLGLGLPCD  SGLKELM+GTPS+FGPKQTTLDF    
Sbjct: 413 QQDSLHWGLGPMEPEGSSLVSAGLGLGLPCDADSGLKELMLGTPSMFGPKQTTLDFLGLG 472

Query: 63  XXXXXXXXXXXXXXITSI--GSGMDVAAAAASFGGGEYSGKDLGRSS 107
                         ITSI  GSG+DV AAAASFG GE+SGKD+GRSS
Sbjct: 473 MAAGGSAGGGLSALITSIGGGSGLDVTAAAASFGNGEFSGKDIGRSS 519