Jatropha Genome Database

JcCB0100471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0100471.10 + phase: 2 /pseudo/partial
         (72 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g093180.1 ELK; KNOX1; KNOX2; Homeodomain-related chr0...   111   1e-25
IMGA|Medtr5g035050.1 ELK; KNOX1; KNOX2; Homeodomain-related chr0...    77   2e-15
IMGA|Medtr1g100620.1 ELK; Homeodomain-related chr01_pseudomolecu...    74   3e-14
IMGA|Medtr5g011210.1 ELK; KNOX1; KNOX2; Homeodomain-related chr0...    47   2e-06
IMGA|Medtr8g122670.1 ELK; KNOX1; KNOX2; Homeodomain-related chr0...    46   5e-06
IMGA|Medtr3g137900.1 ELK; KNOX1; KNOX2; Homeodomain-related chr0...    46   6e-06
IMGA|Medtr3g137900.2 ELK; KNOX1; KNOX2; Homeodomain-related chr0...    46   6e-06

>IMGA|Medtr5g093180.1 ELK; KNOX1; KNOX2; Homeodomain-related
           chr05_pseudomolecule_IMGAG_V3 36623468-36619750 F
           EGN_Mt090430 20090702
          Length = 312

 Score =  111 bits (277), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/67 (79%), Positives = 57/67 (85%), Gaps = 2/67 (2%)

Query: 6   ESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPHYYVDNVLGNPFPM 65
           ESQK ALAESTGLD KQINNWFINQRKRHWKPSEDMQF VMDAT  +YY++NV+  PFPM
Sbjct: 248 ESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDAT--NYYMENVMCKPFPM 305

Query: 66  DISPTLL 72
           D  P LL
Sbjct: 306 DAMPMLL 312


>IMGA|Medtr5g035050.1 ELK; KNOX1; KNOX2; Homeodomain-related
           chr05_pseudomolecule_IMGAG_V3 14425093-14433603 E
           EGN_Mt090430 20090702
          Length = 316

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 39/43 (90%)

Query: 5   VESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMD 47
            E+ K+ LA+STGLDQKQINNWFINQRKRHWKPSE+MQF +M+
Sbjct: 264 TEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMME 306


>IMGA|Medtr1g100620.1 ELK; Homeodomain-related
           chr01_pseudomolecule_IMGAG_V3 20954185-20951220 E
           EGN_Mt090430 20090702
          Length = 150

 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 31/44 (70%), Positives = 37/44 (84%)

Query: 5   VESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDA 48
            E +KL L++ TGLD KQINNWFINQRKRHWKPSEDM+F +M+ 
Sbjct: 97  TEEEKLQLSDMTGLDIKQINNWFINQRKRHWKPSEDMRFSIMEG 140


>IMGA|Medtr5g011210.1 ELK; KNOX1; KNOX2; Homeodomain-related
           chr05_pseudomolecule_IMGAG_V3 3000765-2996172 E
           EGN_Mt090430 20090702
          Length = 305

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 22/31 (70%)

Query: 5   VESQKLALAESTGLDQKQINNWFINQRKRHW 35
            E  K  L E TGL  KQINNWFINQRKR+W
Sbjct: 246 TEDDKAKLVEETGLQLKQINNWFINQRKRNW 276


>IMGA|Medtr8g122670.1 ELK; KNOX1; KNOX2; Homeodomain-related
           chr08_pseudomolecule_IMGAG_V3 28787058-28781546 E
           EGN_Mt090430 20090702
          Length = 332

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 5   VESQKLALAESTGLDQKQINNWFINQRKRHW 35
            E  K  L + TGL  KQINNWFINQRKR+W
Sbjct: 285 TEEDKARLVQETGLQLKQINNWFINQRKRNW 315


>IMGA|Medtr3g137900.1 ELK; KNOX1; KNOX2; Homeodomain-related
           chr03_pseudomolecule_IMGAG_V3 35070779-35066452 E
           EGN_Mt090430 20090702
          Length = 373

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 5   VESQKLALAESTGLDQKQINNWFINQRKRHW 35
            E  K  L + TGL  KQINNWFINQRKR+W
Sbjct: 325 TEEDKARLVQETGLQLKQINNWFINQRKRNW 355


>IMGA|Medtr3g137900.2 ELK; KNOX1; KNOX2; Homeodomain-related
           chr03_pseudomolecule_IMGAG_V3 35070779-35066452 E
           EGN_Mt090430 20090702
          Length = 371

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 5   VESQKLALAESTGLDQKQINNWFINQRKRHW 35
            E  K  L + TGL  KQINNWFINQRKR+W
Sbjct: 325 TEEDKARLVQETGLQLKQINNWFINQRKRNW 355