Jatropha Genome Database

JcCB0100231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0100231.10 - phase: 1 /partial
         (489 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g071430.1 Bromodomain chr02_pseudomolecule_IMGAG_V3 1...   193   1e-49
IMGA|Medtr2g014300.1 Bromodomain chr02_pseudomolecule_IMGAG_V3 3...    75   7e-14
IMGA|Medtr2g013770.1 Bromodomain chr02_pseudomolecule_IMGAG_V3 3...    75   7e-14
IMGA|Medtr4g125570.1 Bromodomain chr04_pseudomolecule_IMGAG_V3 2...    55   6e-08

>IMGA|Medtr2g071430.1 Bromodomain chr02_pseudomolecule_IMGAG_V3
           16418495-16417039 E EGN_Mt090430 20090702
          Length = 353

 Score =  193 bits (491), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 168/368 (45%), Positives = 214/368 (58%), Gaps = 68/368 (18%)

Query: 168 YKNLVRQHLDLETIQTRLEQGSYASSNLSFYRDLLLLFNNAIVFFPKTSNESHAAYELRS 227
           YKN V++H+DLETIQ R+++G Y+S   +F+ DL+ LF+NA VFF + S E  AA +LR 
Sbjct: 8   YKNTVKRHVDLETIQLRVQEGHYSSGTNTFFLDLVTLFSNATVFFSRGSPELRAAQQLRR 67

Query: 228 LVTNEMKKE--------TQKSDSTVAPLDIPPQ-PKSEPERSDSLLAKHKASAPIVVCRK 278
           L+ +EMK          TQKSDS      +PP  P S P+     L+KHK   PI+VCRK
Sbjct: 68  LILDEMKTFGQAQSNTITQKSDS------LPPNTPLSRPDS----LSKHK--PPILVCRK 115

Query: 279 RSSLSAKPSPLSFVQKIEHQQQSSDNE--PVSDLKPLAVEQSSLKIE-----SKEKPVTG 331
           RSS+  KPS  +F  K +H+   +D +  P SD+KP      S   E     +KEKPVTG
Sbjct: 116 RSSIPVKPSTTTFSHKGDHKPIINDKKERPSSDVKPTLKPSYSETDEEEPPKAKEKPVTG 175

Query: 332 TRSSRRSNKNLVKSTNTPSKKP--NVSPVTKVSTADKP-ETPKIDKKKAEPSSLDKKRS- 387
            R SRRSNKNL  S+N  +KKP  N +P T  S+A+KP ETPK+ K KAE  S DKK++ 
Sbjct: 176 AR-SRRSNKNL--SSNASNKKPPSNSTPRTG-SSANKPAETPKL-KNKAEGVS-DKKKNN 229

Query: 388 -AVDFLKRIKKNSPVEV--------------SKKNTRGAANGAGERKRDSPGKGEKGKER 432
            A  FL RIKKN  VEV              SK    G  N   ++K  + GKGEKGKER
Sbjct: 230 GAAGFLNRIKKNESVEVLRSGSGGGGGSSGSSKGGGGGGTNTKEQKKVVNNGKGEKGKER 289

Query: 433 VSRRNGD---------DKQMEESSPSKKNLGRPTKKGAE--ASKVSGKHGRDSGGKEVAK 481
            SR N           +K +E  S SK+N+GRP KK AE  AS   G+    SGGK+  K
Sbjct: 290 ASRYNDGGGSGSGDKRNKNIE--SNSKRNVGRPPKKAAETVASTKRGRESSASGGKD--K 345

Query: 482 RPKKRSRR 489
           RPKKRS++
Sbjct: 346 RPKKRSKK 353


>IMGA|Medtr2g014300.1 Bromodomain chr02_pseudomolecule_IMGAG_V3
           3595907-3585746 E EGN_Mt090430 20090702
          Length = 839

 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 65/107 (60%), Gaps = 1/107 (0%)

Query: 137 SEPLVTLMEIIRSNRHGSFFEGRLESQETEVYKNLVRQHLDLETIQTRLEQGSYASSNLS 196
           +E ++ +++ I      S F  RL+ Q+   YK ++++H+D +TI++R+   +  S+   
Sbjct: 635 AEDMIKILDSIFETEGASAFRRRLDGQKRGKYKKMIQKHMDFDTIRSRISSRTIESTR-E 693

Query: 197 FYRDLLLLFNNAIVFFPKTSNESHAAYELRSLVTNEMKKETQKSDST 243
            YRDLLLL NNA+VF+ K ++E   A  LR +V  +M++  + S S+
Sbjct: 694 LYRDLLLLTNNALVFYSKITHEYKTALLLRGIVAKKMRESLKGSTSS 740


>IMGA|Medtr2g013770.1 Bromodomain chr02_pseudomolecule_IMGAG_V3
           3213476-3203316 E EGN_Mt090430 20090702
          Length = 839

 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 65/107 (60%), Gaps = 1/107 (0%)

Query: 137 SEPLVTLMEIIRSNRHGSFFEGRLESQETEVYKNLVRQHLDLETIQTRLEQGSYASSNLS 196
           +E ++ +++ I      S F  RL+ Q+   YK ++++H+D +TI++R+   +  S+   
Sbjct: 635 AEDMIKILDSIFETEGASAFRRRLDGQKRGKYKKMIQKHMDFDTIRSRISSRTIESTR-E 693

Query: 197 FYRDLLLLFNNAIVFFPKTSNESHAAYELRSLVTNEMKKETQKSDST 243
            YRDLLLL NNA+VF+ K ++E   A  LR +V  +M++  + S S+
Sbjct: 694 LYRDLLLLTNNALVFYSKITHEYKTALLLRGIVAKKMRESLKGSTSS 740


>IMGA|Medtr4g125570.1 Bromodomain chr04_pseudomolecule_IMGAG_V3
           29633746-29631381 E EGN_Mt090430 20090702
          Length = 395

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 140 LVTLMEIIRSNRHGSFFEGRLESQETEVYKNLVRQHLDLETIQTRLEQGSYASSNLSFYR 199
           L+ +++ I   +  S F  + +SQ+ + YK L+++H+D +TI++R+   +   S +  +R
Sbjct: 199 LMAILDSILEIKGASCFCRKHDSQKRQRYKQLIQRHMDFDTIRSRISNKT-IDSVVQLFR 257

Query: 200 DLLLLFNNAIVFFPKTSNESHAAYELRSLV 229
           D+ LL  NA++F+ K + +  +A  +R +V
Sbjct: 258 DMFLLTTNALMFYSKNTRQYKSALLMRDIV 287