Jatropha Genome Database

JcCB0098751.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0098751.20 + phase: 0 /partial
         (227 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g075640.1 Thiamine pyrophosphate enzyme, central regi...   382   e-107
IMGA|AC233100_56.1 Thiamine pyrophosphate enzyme, N-terminal TPP...   377   e-105
IMGA|Medtr3g166930.1 Pyruvate decarboxylase/indolepyruvate decar...   377   e-105
IMGA|Medtr5g048930.1 Pyruvate decarboxylase/indolepyruvate decar...   374   e-104
IMGA|Medtr7g075660.1 Pyruvate decarboxylase/indolepyruvate decar...   364   e-101
IMGA|Medtr2g019000.1 Pyruvate decarboxylase/indolepyruvate decar...   358   2e-99
IMGA|Medtr2g009380.1 Aminoacyl-tRNA synthetase, class I; Pyruvat...   311   2e-85
IMGA|Medtr3g150570.1 Thiamine pyrophosphate enzyme, central regi...    50   6e-07
IMGA|Medtr2g014800.1 Thiamine pyrophosphate enzyme, central regi...    48   4e-06

>IMGA|Medtr7g075640.1 Thiamine pyrophosphate enzyme, central region
           chr07_pseudomolecule_IMGAG_V3 15204059-15207241 E
           EGN_Mt090430 20090702
          Length = 570

 Score =  382 bits (980), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/227 (83%), Positives = 204/227 (89%), Gaps = 6/227 (2%)

Query: 1   MDTKIGSLDTCKPTNGDL--CSPPNSTVSTIQGSVSPTFHTPPDSTLGRHLARRLVQIGV 58
           M+T +GSLD  KPT+ D+  C   NST +TIQ S   T     D+TLGRHLARRLVQ+GV
Sbjct: 1   METMLGSLDIAKPTSNDVVSCKQQNST-ATIQPS---TAIATSDATLGRHLARRLVQVGV 56

Query: 59  SDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 118
           +DVFSVPGDFNLTLLDHLI EP LNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGL
Sbjct: 57  TDVFSVPGDFNLTLLDHLINEPELNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 116

Query: 119 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCFQAVV 178
           SVLNAIAGAYSENLP+ICIVGGPNSNDYGT+RILHHTIG+PDFSQELRCFQTVTCFQAVV
Sbjct: 117 SVLNAIAGAYSENLPLICIVGGPNSNDYGTSRILHHTIGVPDFSQELRCFQTVTCFQAVV 176

Query: 179 NNLEDAHEQIDTAISTALKESKPVYLSVSCNLPGIPHPTFSREPVPF 225
           NNLEDAHE IDTAISTALKESKPVY+S+ CNLPGIPHPTFSR+PVPF
Sbjct: 177 NNLEDAHELIDTAISTALKESKPVYISIGCNLPGIPHPTFSRDPVPF 223


>IMGA|AC233100_56.1 Thiamine pyrophosphate enzyme, N-terminal TPP
           binding region AC233100.6 213439-209408 E EGN_Mt090430
           20090702
          Length = 593

 Score =  377 bits (969), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/227 (81%), Positives = 200/227 (88%), Gaps = 2/227 (0%)

Query: 1   MDTKIGSLDTCKPTNGDLCSPP--NSTVSTIQGSVSPTFHTPPDSTLGRHLARRLVQIGV 58
           MDT +GSL+ CK    D+ + P  N TVSTIQ S S       +STLG HLARRLV++G+
Sbjct: 1   MDTNLGSLEACKSPCNDIITTPTSNGTVSTIQKSPSTQSLASSESTLGSHLARRLVEVGI 60

Query: 59  SDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 118
           +D+F+VPGDFNLTLLDHLIAEP L  IGCCNELNAGYAADGYARSRGVGACVVTFTVGGL
Sbjct: 61  TDIFTVPGDFNLTLLDHLIAEPKLKNIGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 120

Query: 119 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCFQAVV 178
           SV+NAIAGAYSENLPVICIVGGPNSND+GTNRILHHTIGLPDFSQELRCFQTVTC+QAVV
Sbjct: 121 SVINAIAGAYSENLPVICIVGGPNSNDFGTNRILHHTIGLPDFSQELRCFQTVTCYQAVV 180

Query: 179 NNLEDAHEQIDTAISTALKESKPVYLSVSCNLPGIPHPTFSREPVPF 225
           NNLEDAHE IDTAISTALKESKPVY+S+SCNL  IPHPTFSREPVPF
Sbjct: 181 NNLEDAHEMIDTAISTALKESKPVYISISCNLASIPHPTFSREPVPF 227


>IMGA|Medtr3g166930.1 Pyruvate decarboxylase/indolepyruvate
           decarboxylase chr03_pseudomolecule_IMGAG_V3
           43796566-43800597 E EGN_Mt090430 20090702
          Length = 607

 Score =  377 bits (968), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/227 (81%), Positives = 200/227 (88%), Gaps = 2/227 (0%)

Query: 1   MDTKIGSLDTCKPTNGDLCSPP--NSTVSTIQGSVSPTFHTPPDSTLGRHLARRLVQIGV 58
           MDT +GSL+ CK    D+ + P  N TVSTIQ S S       +STLG HLARRLV++G+
Sbjct: 1   MDTNLGSLEACKSPCNDIITTPTSNGTVSTIQKSPSTQSLASSESTLGSHLARRLVEVGI 60

Query: 59  SDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 118
           +D+F+VPGDFNLTLLDHLIAEP L  IGCCNELNAGYAADGYARSRGVGACVVTFTVGGL
Sbjct: 61  TDIFTVPGDFNLTLLDHLIAEPKLKNIGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 120

Query: 119 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCFQAVV 178
           SV+NAIAGAYSENLPVICIVGGPNSND+GTNRILHHTIGLPDFSQELRCFQTVTC+QAVV
Sbjct: 121 SVINAIAGAYSENLPVICIVGGPNSNDFGTNRILHHTIGLPDFSQELRCFQTVTCYQAVV 180

Query: 179 NNLEDAHEQIDTAISTALKESKPVYLSVSCNLPGIPHPTFSREPVPF 225
           NNLEDAHE IDTAISTALKESKPVY+S+SCNL  IPHPTFSREPVPF
Sbjct: 181 NNLEDAHEMIDTAISTALKESKPVYISISCNLASIPHPTFSREPVPF 227


>IMGA|Medtr5g048930.1 Pyruvate decarboxylase/indolepyruvate
           decarboxylase chr05_pseudomolecule_IMGAG_V3
           20807626-20810741 E EGN_Mt090430 20090702
          Length = 616

 Score =  374 bits (961), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/227 (80%), Positives = 199/227 (87%), Gaps = 2/227 (0%)

Query: 1   MDTKIGSLDTCKPTNGDLCSPP--NSTVSTIQGSVSPTFHTPPDSTLGRHLARRLVQIGV 58
           MDT +GSL+ CK    D+ + P  N TVSTIQ S S       +STLG HLARRLV++G+
Sbjct: 1   MDTNLGSLEACKSPCNDIITTPSSNGTVSTIQKSPSTQSLASSESTLGSHLARRLVEVGI 60

Query: 59  SDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 118
           +D+F+VPGDFNLTLLDHLIAEP L  IGCCNELNAGYAADGYARSRGVGACVVTFTVGGL
Sbjct: 61  TDIFTVPGDFNLTLLDHLIAEPKLKNIGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 120

Query: 119 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCFQAVV 178
           SV+NAIAGAYSENLPVICIVGGPNSND+GTNRILHHTIGLPDFSQELRCFQTVTC+QAVV
Sbjct: 121 SVINAIAGAYSENLPVICIVGGPNSNDFGTNRILHHTIGLPDFSQELRCFQTVTCYQAVV 180

Query: 179 NNLEDAHEQIDTAISTALKESKPVYLSVSCNLPGIPHPTFSREPVPF 225
           NNLEDAHE IDTAISTALKESKPVY+S+SCNL  IPHPTFS EPVPF
Sbjct: 181 NNLEDAHEMIDTAISTALKESKPVYISISCNLASIPHPTFSHEPVPF 227


>IMGA|Medtr7g075660.1 Pyruvate decarboxylase/indolepyruvate
           decarboxylase chr07_pseudomolecule_IMGAG_V3
           15223386-15226858 E EGN_Mt090430 20090702
          Length = 605

 Score =  364 bits (935), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/228 (79%), Positives = 202/228 (88%), Gaps = 6/228 (2%)

Query: 1   MDTKI-GSLDTCKPTNGDL--CSPPNSTVSTIQGSVSPTFHTPPDSTLGRHLARRLVQIG 57
           MDT + GSLD  KPT  D+  C+ PN T + IQ S +    T  ++TLGRHLARRLVQ+G
Sbjct: 1   MDTMLLGSLDLTKPTTNDVISCTKPNGT-TVIQPSSTAISST--NATLGRHLARRLVQVG 57

Query: 58  VSDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGG 117
           V+D+FSVPGDFNLTLLD+LI EP LN+IGCCNELNAGYAADGYARS GVGACVVTFTVGG
Sbjct: 58  VTDIFSVPGDFNLTLLDYLIDEPKLNVIGCCNELNAGYAADGYARSCGVGACVVTFTVGG 117

Query: 118 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCFQAV 177
           LSVLNAIAGAYSENLP+ICIVGGPNSNDYG+NRILHHTIG+ DFSQEL+CFQTVTCFQAV
Sbjct: 118 LSVLNAIAGAYSENLPLICIVGGPNSNDYGSNRILHHTIGISDFSQELKCFQTVTCFQAV 177

Query: 178 VNNLEDAHEQIDTAISTALKESKPVYLSVSCNLPGIPHPTFSREPVPF 225
           VN+LEDAHE IDTAISTALKESKPVY+S+SCNLP IPHPTFSREP+PF
Sbjct: 178 VNHLEDAHELIDTAISTALKESKPVYISISCNLPAIPHPTFSREPIPF 225


>IMGA|Medtr2g019000.1 Pyruvate decarboxylase/indolepyruvate
           decarboxylase chr02_pseudomolecule_IMGAG_V3
           5120161-5123793 E EGN_Mt090430 20090702
          Length = 582

 Score =  358 bits (918), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 172/206 (83%), Positives = 186/206 (90%), Gaps = 7/206 (3%)

Query: 20  SPPNSTVSTIQGSVSPTFHTPPDSTLGRHLARRLVQIGVSDVFSVPGDFNLTLLDHLIAE 79
           SPP+S  ST++           D T+G HLARRLV+IGV DVFSVPGDFNLTLLDHLIAE
Sbjct: 4   SPPSSAPSTVRPFTC-------DGTMGGHLARRLVEIGVRDVFSVPGDFNLTLLDHLIAE 56

Query: 80  PGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVG 139
           P LNL+GCCNELNAGYAADGYAR++GVGACVVTFTVGGLS+LNAIAGAYSENLPVICIVG
Sbjct: 57  PELNLVGCCNELNAGYAADGYARAKGVGACVVTFTVGGLSILNAIAGAYSENLPVICIVG 116

Query: 140 GPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCFQAVVNNLEDAHEQIDTAISTALKES 199
           GPNSNDYGTNRILHHTIGLPDFSQELRCFQT+TCFQAVVNNLEDAHE IDTAISTALKES
Sbjct: 117 GPNSNDYGTNRILHHTIGLPDFSQELRCFQTITCFQAVVNNLEDAHELIDTAISTALKES 176

Query: 200 KPVYLSVSCNLPGIPHPTFSREPVPF 225
           KPVY+S+ CNLP IPHPTF+R+PVPF
Sbjct: 177 KPVYISIGCNLPAIPHPTFARDPVPF 202


>IMGA|Medtr2g009380.1 Aminoacyl-tRNA synthetase, class I; Pyruvate
           decarboxylase/indolepyruvate decarboxylase
           chr02_pseudomolecule_IMGAG_V3 2055934-2058985 E
           EGN_Mt090430 20090702
          Length = 612

 Score =  311 bits (796), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 137/183 (74%), Positives = 169/183 (92%)

Query: 44  TLGRHLARRLVQIGVSDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARS 103
           TLG H+A+RLV+IG++DVF+VPGDFNLTLLD+L+AEP +NLIGCCNELNAGYA DGYAR 
Sbjct: 51  TLGHHIAKRLVEIGINDVFAVPGDFNLTLLDYLVAEPEINLIGCCNELNAGYATDGYARC 110

Query: 104 RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQ 163
           RGVGACVVTF VGGLS+LNAIAG+YSE+LP+ICIVG PNSND+G+N+ILHHTIGLPDFSQ
Sbjct: 111 RGVGACVVTFNVGGLSILNAIAGSYSEDLPIICIVGAPNSNDFGSNKILHHTIGLPDFSQ 170

Query: 164 ELRCFQTVTCFQAVVNNLEDAHEQIDTAISTALKESKPVYLSVSCNLPGIPHPTFSREPV 223
           ELRCF+ VTC QAV+ +++DAHE+IDTAI+ AL+ESKPVY+S++CNLP IPH +F+ + +
Sbjct: 171 ELRCFEPVTCHQAVIKDIDDAHEKIDTAIAIALRESKPVYISIACNLPTIPHSSFTDQSI 230

Query: 224 PFH 226
           PF+
Sbjct: 231 PFY 233


>IMGA|Medtr3g150570.1 Thiamine pyrophosphate enzyme, central region
           chr03_pseudomolecule_IMGAG_V3 39709851-39707521 E
           EGN_Mt090430 20090702
          Length = 651

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 1/129 (0%)

Query: 22  PNSTVSTIQGSVSPTFHTPPDSTLGRHLARRLVQIGVSDVFSVPGDFNLTLLDHLIAEPG 81
           P ST +T+    +  F +         L   L + GV++VF+ PG  ++ +   L     
Sbjct: 57  PPSTTTTVDEPFTSRFSSTQPRKGSDILVEALEREGVTNVFAYPGGASMEIHQALTRSKT 116

Query: 82  LNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGG 140
           +  I   +E    +AA+GYARS G+ G C+ T   G  ++++ +A A  +++P+I I G 
Sbjct: 117 IRNILPRHEQGGVFAAEGYARSSGLPGVCIATSGPGATNLVSGLADALMDSVPLIAITGQ 176

Query: 141 PNSNDYGTN 149
                 GT+
Sbjct: 177 VPRRMIGTD 185


>IMGA|Medtr2g014800.1 Thiamine pyrophosphate enzyme, central region
           chr02_pseudomolecule_IMGAG_V3 3895927-3898178 F
           EGN_Mt090430 20090702
          Length = 655

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 1/102 (0%)

Query: 49  LARRLVQIGVSDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-G 107
           L   L + GV++VF+ PG  ++ +   L     +  +   +E    +AA+GYARS G+ G
Sbjct: 88  LVESLERQGVTNVFAYPGGASMEIHQALTRSTAIRNVLPRHEQGGIFAAEGYARSSGLPG 147

Query: 108 ACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN 149
            C+ T   G  ++++ +A A  +++P+I I G       GT+
Sbjct: 148 VCIATSGPGATNLVSGLADAMLDSVPLIAITGQVPRRMIGTD 189