Jatropha Genome Database

JcCB0097471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0097471.10 + phase: 0 
         (511 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g025530.1 3-phosphoshikimate 1-carboxyvinyltransferas...   758   0.0  

>IMGA|Medtr4g025530.1 3-phosphoshikimate 1-carboxyvinyltransferase
           chr04_pseudomolecule_IMGAG_V3 6110814-6104717 E
           EGN_Mt090430 20090702
          Length = 522

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/509 (74%), Positives = 418/509 (82%), Gaps = 9/509 (1%)

Query: 9   FPNLSKPQRPKSLPSVSFKSQFHGSPISRGLIQCQRR--GDCTVRMGS---IRVSASVAT 63
           F N +   +  S  SVS +S   GS  S  L        G+C V  G+   ++ SA+VA 
Sbjct: 17  FHNSTNSNKLNSAKSVSLRSSIWGSSKSWSLKHKNGVFIGNCDVGRGNSVVLKASANVAA 76

Query: 64  AEKPSTVPEIVLQPIKEISGTVKLPGSKSLSNRILLLAALSEGTTVVDNLLNSDDVRYML 123
           AEKPST PEIVL+PIKEISG++ LPGSKSLSNRILLLAALSEGTTVV+NLL+S+D+ YML
Sbjct: 77  AEKPSTAPEIVLEPIKEISGSITLPGSKSLSNRILLLAALSEGTTVVENLLDSEDIHYML 136

Query: 124 GALRTLGLHVEDNSELKQAIVGGCGGYFPVGKESKDDIELFLGNAGTAMRPLTAAVTAAG 183
            AL+TLGL VED+   KQA+V G GG FP   ESKD++ LFLGNAGTAMRPLTAA+ AAG
Sbjct: 137 EALKTLGLRVEDDKTTKQAVVEGSGGLFP---ESKDEVNLFLGNAGTAMRPLTAALVAAG 193

Query: 184 GNSSYILDGVPRMRERPIGDLVVGLKQLGADVACS-PTNCPPVRVNAKGGLPGGKVKLSG 242
           GN+ YILDGVPRMRERPIGDLV GLKQLGADV C   TNCPPVR+  KGGLPGGKVKLSG
Sbjct: 194 GNTRYILDGVPRMRERPIGDLVSGLKQLGADVDCYLGTNCPPVRIIGKGGLPGGKVKLSG 253

Query: 243 SISSQYXXXXXXXXXXXXGDVEIEIIDKLISIPYVEMTLKLMERYGVNVEHSGSWDRFFI 302
           SISSQY            GDVEIEI+DKLIS+PYVEMTLKLMER+GV VEHS +WDRF +
Sbjct: 254 SISSQYLTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKLMERFGVFVEHSANWDRFLV 313

Query: 303 RGGQKYRSPGNSYVEGDASSASYFLXXXXXXXXXXXVEGCGTSSLQGDVKFAEVLEKMGA 362
            GGQKY+SPGN++VEGDASSASYFL           V GCGTSSLQGDVKFAEVLEKMGA
Sbjct: 314 HGGQKYKSPGNAFVEGDASSASYFLAGAAVTGGTITVIGCGTSSLQGDVKFAEVLEKMGA 373

Query: 363 KVTWTENSVTVTGPPRNSPSQKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASW 422
           KVTWTENSVTVTGPPR+S  +K L+ +DVNMNKMPDVAMTLAVVAL+A+GPTAIRDVASW
Sbjct: 374 KVTWTENSVTVTGPPRDSSGRKVLQGIDVNMNKMPDVAMTLAVVALYANGPTAIRDVASW 433

Query: 423 RVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLNVAEIDTYDDHRMAMAFSLAACG 482
           RVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLNV  IDTYDDHRMAMAFSLAACG
Sbjct: 434 RVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLNVTSIDTYDDHRMAMAFSLAACG 493

Query: 483 DVPVTIKDPGCTRKTFPDYFEVLERFTKH 511
           DVPVTIKDPGCTRKTFPDYF+VLERFTKH
Sbjct: 494 DVPVTIKDPGCTRKTFPDYFQVLERFTKH 522