Jatropha Genome Database

JcCB0097241.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0097241.20 - phase: 2 /partial
         (441 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g122780.1 Lipid-binding START chr03_pseudomolecule_IM...   522   e-148
IMGA|Medtr5g007180.1 Lipid-binding START chr05_pseudomolecule_IM...   338   3e-93
IMGA|Medtr4g163310.1 Lipid-binding START chr04_pseudomolecule_IM...   136   2e-32
IMGA|Medtr4g163310.2 Lipid-binding START chr04_pseudomolecule_IM...    82   4e-16
IMGA|Medtr5g007170.1 hypothetical protein chr05_pseudomolecule_I...    49   4e-06

>IMGA|Medtr3g122780.1 Lipid-binding START
           chr03_pseudomolecule_IMGAG_V3 30625124-30628744 E
           EGN_Mt090430 20090702
          Length = 424

 Score =  522 bits (1345), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 254/413 (61%), Positives = 315/413 (76%), Gaps = 9/413 (2%)

Query: 37  VMFMAPLWIAVIIGVLVGWAWKPKW-ANLGRELLDSSVNKDSANTVPSPASSSI-PTLNS 94
            MFM+P+ +   +G++VGW WKPKW ++L +    +S   DS    P    SS+ P +NS
Sbjct: 12  TMFMSPMLLVFFLGIIVGWLWKPKWISSLAKSFDLASPISDSPIFSPLKFYSSLSPCVNS 71

Query: 95  -LKFQLPSCISWIADDGIQKXXXXXXXXXX--XXXXXKQSQKESSGIVNEDDLEHLCKLV 151
            +  Q P+  S   +  I K                  +S +++S  V  DDL HL KLV
Sbjct: 72  SITMQTPNPDSLCINKEINKKGSSSSSPTNFDSSTSSNKSGEDTSNGVTIDDLHHLYKLV 131

Query: 152 EEKDGGPAWIQMMDRSTPTMSYKAWRRDPENGPPQYRSSTVFEDATPEMVRDFFWDDEFR 211
           EEKDGG  WIQMMD+STPTMSY+AWRR+P++GPPQYRSST+FEDATPEMVRD FWDD+FR
Sbjct: 132 EEKDGGLPWIQMMDKSTPTMSYQAWRREPKDGPPQYRSSTIFEDATPEMVRDLFWDDQFR 191

Query: 212 MKWDDMLIHAATLEECPTTGTMIVQWVRKFPFFCSDREYIIGRRIWESGRLYYCVTKGVP 271
            KWDDML+++ TLEECPTTGTM VQW+RKFPFFC DREYIIGRRIWE GR YYC+TKGV 
Sbjct: 192 PKWDDMLVNSTTLEECPTTGTMKVQWIRKFPFFCKDREYIIGRRIWECGRSYYCITKGVD 251

Query: 272 CMSVPRRNKPRRVDLYYSSWCVRAVESKRGDGQLTACEVLLFHHEDMGIPWEIAKLGVRQ 331
           C S+PR+ KPRRVD+YYSSWC+RAVESKR +GQLTACE+LLFHHE+MGIPWEIAKLGVR+
Sbjct: 252 CPSIPRQEKPRRVDVYYSSWCIRAVESKRDNGQLTACEILLFHHEEMGIPWEIAKLGVRK 311

Query: 332 GMWGAVKKIEPGLRAYQKQRAAGDPLSRCAFMAQINTKVSADYLRSLESNANSSL--EAA 389
           GMWG V+KIEPGLRAYQ+ +A+G PLSR AFMA +NTK+S +YL+S+ S+ + SL  E+A
Sbjct: 312 GMWGMVQKIEPGLRAYQEAKASGAPLSRSAFMAGVNTKISPEYLQSIGSSDDESLQTESA 371

Query: 390 TQDSSKKSGGNIPRMLVLGGAIALACTLDRGLLTKAVIFGVARR--FAKIGRR 440
                K  G  +P+MLV+GGA+ALAC+LD+GL+TKAVIFGVA+R  FA +G+R
Sbjct: 372 ITSDDKPKGMTVPKMLVIGGAVALACSLDKGLVTKAVIFGVAKRFGFANMGKR 424


>IMGA|Medtr5g007180.1 Lipid-binding START
           chr05_pseudomolecule_IMGAG_V3 1003003-1005138 E
           EGN_Mt090430 20090702
          Length = 276

 Score =  338 bits (867), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 159/275 (57%), Positives = 199/275 (72%), Gaps = 2/275 (0%)

Query: 164 MDRSTPTMSYKAWRRDPENGPPQYRSSTVFEDATPEMVRDFFWDDEFRMKWDDMLIHAAT 223
           M+RSTP M YKAWR D E G   YRS TVFEDATPE+VRDFFWDD+FR KWD ML H   
Sbjct: 1   MERSTPNMQYKAWRYDSETGATVYRSRTVFEDATPELVRDFFWDDDFRPKWDPMLAHCKV 60

Query: 224 LEECPTTGTMIVQWVRKFPFFCSDREYIIGRRIWESGRLYYCVTKGVPCMSVPRRNKPRR 283
           L+ECP  GT IV W++KFPFFCSDREYII RRIW++G  YYCVTKGVP  S+P+R+KPRR
Sbjct: 61  LKECPHNGTSIVHWIKKFPFFCSDREYIIARRIWQAGNAYYCVTKGVPYPSLPKRDKPRR 120

Query: 284 VDLYYSSWCVRAVESKRGDGQLTACEVLLFHHEDMGIPWEIAKLGVRQGMWGAVKKIEPG 343
           VDLY+SSW ++ VES++GDGQL+ACEV L HHEDMGIP ++AKLGVR GMWGAVKK+  G
Sbjct: 121 VDLYFSSWVIKPVESRKGDGQLSACEVTLLHHEDMGIPKDVAKLGVRHGMWGAVKKLHSG 180

Query: 344 LRAYQKQRAAGDPLSRCAFMAQINTKVSAD-YLRSLE-SNANSSLEAATQDSSKKSGGNI 401
           +RAYQ  R     LSRCA MA   T++S++  L SLE ++     E A  ++ +   G  
Sbjct: 181 MRAYQNARKTDASLSRCALMASKTTRLSSNGNLHSLEDASLMEEREQAINNARQIGHGLD 240

Query: 402 PRMLVLGGAIALACTLDRGLLTKAVIFGVARRFAK 436
            + + LGG +A+   +  G + +A++ G   RFA+
Sbjct: 241 WKWVALGGTVAVVLGIHSGAVGRALLLGAGHRFAR 275


>IMGA|Medtr4g163310.1 Lipid-binding START
           chr04_pseudomolecule_IMGAG_V3 41389784-41385812 F
           EGN_Mt090430 20090702
          Length = 381

 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 122/226 (53%), Gaps = 12/226 (5%)

Query: 135 SSGIVNEDDLEHLCKLVEEK-DGGPAWIQMMDRSTPTMSYKAWRRDPENGPPQYRSSTVF 193
           +S IV  +DL+ L  + +   +    W  ++D+    + Y A    P+NGP +Y S TVF
Sbjct: 68  TSKIVTNEDLKFLMMIFDGNLNENAKWEDVIDKRNDHLCYNAKSCKPKNGPLRYLSVTVF 127

Query: 194 EDATPEMVRDFFWDDEFRMKWDDMLIHAATLEECPTTGTMIVQWVRKFPFFCSDREYIIG 253
            + + EM+R+F+ D+++R +WD  ++    L+   + G+ + + V+KFP     REY++ 
Sbjct: 128 NNISAEMLRNFYMDNDYRKQWDKTVVEHNQLQVDKSDGSEVGRTVKKFPLL-KPREYVLT 186

Query: 254 RRIWES-GRLYYCVTKGVPCMSVPRRNKPRRVDLYYSSWCVRAVESKRGDGQLTACEVLL 312
            ++WE   + +YC  K       PR+NK  RV+ + S W +R V  +       ACE+ +
Sbjct: 187 WKLWEGRDKTFYCYIKECEHTLAPRQNKYVRVEFFRSGWRIRQVPGR------NACEITM 240

Query: 313 FHHEDMGIPWEIAKLGVRQGMWGAVKKIEPGLRAYQKQRAAGDPLS 358
           FH ED G+  E+AKL   +G+W  V K++  LR Y    AA   LS
Sbjct: 241 FHQEDAGLNVEMAKLAFSKGIWSYVCKMDNALRRYS---AASGHLS 283


>IMGA|Medtr4g163310.2 Lipid-binding START
           chr04_pseudomolecule_IMGAG_V3 41389784-41387773 F
           EGN_Mt090430 20090702
          Length = 211

 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 80/144 (55%), Gaps = 4/144 (2%)

Query: 135 SSGIVNEDDLEHLCKLVEEK-DGGPAWIQMMDRSTPTMSYKAWRRDPENGPPQYRSSTVF 193
           +S IV  +DL+ L  + +   +    W  ++D+    + Y A    P+NGP +Y S TVF
Sbjct: 68  TSKIVTNEDLKFLMMIFDGNLNENAKWEDVIDKRNDHLCYNAKSCKPKNGPLRYLSVTVF 127

Query: 194 EDATPEMVRDFFWDDEFRMKWDDMLIHAATLEECPTTGTMIVQWVRKFPFFCSDREYIIG 253
            + + EM+R+F+ D+++R +WD  ++    L+   + G+ + + V+KFP     REY++ 
Sbjct: 128 NNISAEMLRNFYMDNDYRKQWDKTVVEHNQLQVDKSDGSEVGRTVKKFPLL-KPREYVLT 186

Query: 254 RRIWES-GRLYYCVTKGV-PCMSV 275
            ++WE   + +YC  K + P M +
Sbjct: 187 WKLWEGRDKTFYCYIKVIHPIMGL 210


>IMGA|Medtr5g007170.1 hypothetical protein
          chr05_pseudomolecule_IMGAG_V3 1000002-1003001 E
          EGN_Mt090430 20090702
          Length = 123

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 34/45 (75%)

Query: 20 LLDILNRPTIGDIVAELVMFMAPLWIAVIIGVLVGWAWKPKWANL 64
          +++ + +P+I +   ++++   P+W+AV+IG+++GW+W+P+W  L
Sbjct: 8  VMEFMKKPSITETFVDILLCAVPIWLAVMIGLVIGWSWRPRWTGL 52