Jatropha Genome Database

JcCB0096311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0096311.10 + phase: 0 
         (301 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g143800.1 Zinc finger, FYVE/PHD-type chr03_pseudomole...    51   7e-07
IMGA|Medtr1g008760.1 Zinc finger, FYVE/PHD-type chr01_pseudomole...    50   2e-06
IMGA|Medtr5g010390.1 AT-rich interaction region; Transcription f...    49   2e-06

>IMGA|Medtr3g143800.1 Zinc finger, FYVE/PHD-type
           chr03_pseudomolecule_IMGAG_V3 37165865-37163241 H
           EGN_Mt090430 20090702
          Length = 156

 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 179 SSCLCRVCLLDRDDHQIVLCDGCDHAFHLYCLNPPRTSVPRGKWFCRQCDVKIKEIRRVK 238
           S C+C  C       +++LCD CD  FH+ CL P    VP G W C +C  +++ ++ V 
Sbjct: 75  SDCMCERCGSGEQPEELLLCDKCDKGFHMKCLRPILARVPIGSWICPKCCFELERLKSVL 134

Query: 239 KAY 241
             Y
Sbjct: 135 TVY 137


>IMGA|Medtr1g008760.1 Zinc finger, FYVE/PHD-type
           chr01_pseudomolecule_IMGAG_V3 899054-899629 H
           EGN_Mt090430 20090702
          Length = 114

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 182 LCRVCLLDRDDHQIVLCDGCDHAFHLYCLNPPRTSVPRGKWFCRQC 227
           +C+ C   +   +++LCD CD+ +HL+CL P   SVP+  WFC  C
Sbjct: 28  VCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSC 73


>IMGA|Medtr5g010390.1 AT-rich interaction region; Transcription
           factor jumonji, jmjC; Transcription factor jumonji,
           JmjN; Zinc finger, C5HC2-type; Zinc finger,
           FYVE/PHD-type; chr05_pseudomolecule_IMGAG_V3
           2537448-2547205 E EGN_Mt090430 20090702
          Length = 886

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 21  CRHCGGKADGRDCLVCDSCEEMYHVSCIQPAVKEIPLKSWYCASCTA 67
           C  C     G   L+CD C++ +H+ C+ P +K+IPL +WYC +C +
Sbjct: 245 CEQCKSGLHGEVMLLCDRCDKGWHIYCLSPPLKQIPLGNWYCFNCLS 291



 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 182 LCRVCLLDRDDHQIVLCDGCDHAFHLYCLNPPRTSVPRGKWFCRQC 227
           +C  C        ++LCD CD  +H+YCL+PP   +P G W+C  C
Sbjct: 244 ICEQCKSGLHGEVMLLCDRCDKGWHIYCLSPPLKQIPLGNWYCFNC 289