Jatropha Genome Database

JcCB0095251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0095251.10 - phase: 2 /partial
         (668 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g118360.1 Proteasome component region PCI chr07_pseud...   555   e-158
IMGA|Medtr7g118360.2 Proteasome component region PCI chr07_pseud...   554   e-158
IMGA|Medtr7g104030.1 Proteasome component region PCI chr07_pseud...   302   4e-82
IMGA|Medtr7g117270.1 Eukaryotic translation initiation factor 3 ...   174   1e-43
IMGA|Medtr7g043410.1 Eukaryotic translation initiation factor 3 ...    72   6e-13

>IMGA|Medtr7g118360.1 Proteasome component region PCI
           chr07_pseudomolecule_IMGAG_V3 27920590-27913718 E
           EGN_Mt090430 20090702
          Length = 959

 Score =  555 bits (1429), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 316/605 (52%), Positives = 382/605 (63%), Gaps = 18/605 (2%)

Query: 4   LKMKKSATCRMANLIGFNLDPKPESREALSRPSLLSELISKGVLSCATQEVKDLYHLLEN 63
           L+ +K    RMANLIGFNL+ KP+SRE LSR SLL+EL SKGV+SC +QEVKD+Y+LLEN
Sbjct: 344 LEHEKERNLRMANLIGFNLETKPDSREVLSRSSLLAELASKGVMSCVSQEVKDIYYLLEN 403

Query: 64  EFLPLDLAAKVQPLLSKISKLGGKIASASSVPEVQLSQYVPALEKLATLRLLQQVSQVYQ 123
           EFLP DLA KV PLL+KISKLGGK   ASSVPEVQ SQYVPALEKLATLRLLQQVS VYQ
Sbjct: 404 EFLPSDLALKVLPLLNKISKLGGKFTFASSVPEVQFSQYVPALEKLATLRLLQQVSNVYQ 463

Query: 124 MMKIESLSQMIPFLDFSVVEKISVDAVKHNFLAMKVEHTKGVILFNNLGLESDGLRDHLA 183
            MKIE+L+ MIPF DFSVVEKISVDAVK  FL+MKV+H K V++F    LE+DGLRDHLA
Sbjct: 464 SMKIENLAGMIPFFDFSVVEKISVDAVKQKFLSMKVDHMKNVVIFCKTSLEADGLRDHLA 523

Query: 184 IFAESLNKVRALIYPPAKKSSKLGEILPGLGEIVDKEHKRLLARKSIIXXXXXXXXXXXX 243
            FAE LNK R +I PP +K SKLG +LP L E+V KEHKRLLARKSII            
Sbjct: 524 SFAEQLNKARQMICPPDRKQSKLGALLPTLSEVVAKEHKRLLARKSIIEKRKEEQERQLL 583

Query: 244 XXXXXXXXXXXXXXXKREEAEQKRLAAEIEQRKNXXXXXXXXXXXXXXXXXXXXDVDKRS 303
                            EEAEQ+RLA EIEQRK                     + +KR 
Sbjct: 584 EKEREEESKRLRLLKIDEEAEQRRLATEIEQRKIQRLQREKEERDREEAEALRLEAEKRL 643

Query: 304 KRKGGKKPILEGEKVTKQTIMERALSEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPL 363
           KRK GKKP++EG +++++++M+  L EQ+RERQEMEKKLQKLAKTMD+LERAKREEAAPL
Sbjct: 644 KRK-GKKPVIEGGQISRESLMQLTLVEQVRERQEMEKKLQKLAKTMDHLERAKREEAAPL 702

Query: 364 IEAAFQRRLVEEKALNEHEQQLEIELSRQRHDGDLREKNRLSRMLENKMIFQERVMSRRQ 423
           I+AA+Q+RLVEE+ L+E EQQLE+ELSRQRH GDL EK RLSRM+ NK I+QERV+S RQ
Sbjct: 703 IDAAYQQRLVEERVLHEREQQLEVELSRQRHAGDLNEKERLSRMMGNKEIYQERVVSHRQ 762

Query: 424 AEFDRLRTEREERINQIIQARKQEREANRKKIFYVRTXXXXXXXXXXXXXXXXXXXXXXX 483
           AEF+RL+ +R +RI++I+ +RKQERE  RK  +Y++                        
Sbjct: 763 AEFNRLQRDRLDRISKILLSRKQEREKMRKLKYYLKVEEEKRQKLREEEEAREREEAERK 822

Query: 484 XXXXXXXXXXXDEIAXXXXXXXXXXXXXXXXXXXXXXXGRSTDGPTRPSELAAGSRQEPG 543
                      DEIA                       GR  +   RP E       +PG
Sbjct: 823 KKEQAERQAKLDEIAEKQKQRLREIEEKAEREKREALLGRPAEPALRPYEPPVRP-VDPG 881

Query: 544 XXXXXXXXXXXXXXXXXXXXXXXXXGKYVPRFRR-DRESTGQAPPDSEKWGGGSSRQAPS 602
                                    GKYVP+FRR   E+ G  PP++++WG   SR    
Sbjct: 882 ------------TAAPAAAAAAPAPGKYVPKFRRGGGETAGAPPPEADRWGNSGSR---P 926

Query: 603 EPERW 607
           + +RW
Sbjct: 927 DGDRW 931


>IMGA|Medtr7g118360.2 Proteasome component region PCI
           chr07_pseudomolecule_IMGAG_V3 27920590-27913718 E
           EGN_Mt090430 20090702
          Length = 910

 Score =  554 bits (1427), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 316/605 (52%), Positives = 382/605 (63%), Gaps = 18/605 (2%)

Query: 4   LKMKKSATCRMANLIGFNLDPKPESREALSRPSLLSELISKGVLSCATQEVKDLYHLLEN 63
           L+ +K    RMANLIGFNL+ KP+SRE LSR SLL+EL SKGV+SC +QEVKD+Y+LLEN
Sbjct: 295 LEHEKERNLRMANLIGFNLETKPDSREVLSRSSLLAELASKGVMSCVSQEVKDIYYLLEN 354

Query: 64  EFLPLDLAAKVQPLLSKISKLGGKIASASSVPEVQLSQYVPALEKLATLRLLQQVSQVYQ 123
           EFLP DLA KV PLL+KISKLGGK   ASSVPEVQ SQYVPALEKLATLRLLQQVS VYQ
Sbjct: 355 EFLPSDLALKVLPLLNKISKLGGKFTFASSVPEVQFSQYVPALEKLATLRLLQQVSNVYQ 414

Query: 124 MMKIESLSQMIPFLDFSVVEKISVDAVKHNFLAMKVEHTKGVILFNNLGLESDGLRDHLA 183
            MKIE+L+ MIPF DFSVVEKISVDAVK  FL+MKV+H K V++F    LE+DGLRDHLA
Sbjct: 415 SMKIENLAGMIPFFDFSVVEKISVDAVKQKFLSMKVDHMKNVVIFCKTSLEADGLRDHLA 474

Query: 184 IFAESLNKVRALIYPPAKKSSKLGEILPGLGEIVDKEHKRLLARKSIIXXXXXXXXXXXX 243
            FAE LNK R +I PP +K SKLG +LP L E+V KEHKRLLARKSII            
Sbjct: 475 SFAEQLNKARQMICPPDRKQSKLGALLPTLSEVVAKEHKRLLARKSIIEKRKEEQERQLL 534

Query: 244 XXXXXXXXXXXXXXXKREEAEQKRLAAEIEQRKNXXXXXXXXXXXXXXXXXXXXDVDKRS 303
                            EEAEQ+RLA EIEQRK                     + +KR 
Sbjct: 535 EKEREEESKRLRLLKIDEEAEQRRLATEIEQRKIQRLQREKEERDREEAEALRLEAEKRL 594

Query: 304 KRKGGKKPILEGEKVTKQTIMERALSEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPL 363
           KRK GKKP++EG +++++++M+  L EQ+RERQEMEKKLQKLAKTMD+LERAKREEAAPL
Sbjct: 595 KRK-GKKPVIEGGQISRESLMQLTLVEQVRERQEMEKKLQKLAKTMDHLERAKREEAAPL 653

Query: 364 IEAAFQRRLVEEKALNEHEQQLEIELSRQRHDGDLREKNRLSRMLENKMIFQERVMSRRQ 423
           I+AA+Q+RLVEE+ L+E EQQLE+ELSRQRH GDL EK RLSRM+ NK I+QERV+S RQ
Sbjct: 654 IDAAYQQRLVEERVLHEREQQLEVELSRQRHAGDLNEKERLSRMMGNKEIYQERVVSHRQ 713

Query: 424 AEFDRLRTEREERINQIIQARKQEREANRKKIFYVRTXXXXXXXXXXXXXXXXXXXXXXX 483
           AEF+RL+ +R +RI++I+ +RKQERE  RK  +Y++                        
Sbjct: 714 AEFNRLQRDRLDRISKILLSRKQEREKMRKLKYYLKVEEEKRQKLREEEEAREREEAERK 773

Query: 484 XXXXXXXXXXXDEIAXXXXXXXXXXXXXXXXXXXXXXXGRSTDGPTRPSELAAGSRQEPG 543
                      DEIA                       GR  +   RP E       +PG
Sbjct: 774 KKEQAERQAKLDEIAEKQKQRLREIEEKAEREKREALLGRPAEPALRPYEPPVRP-VDPG 832

Query: 544 XXXXXXXXXXXXXXXXXXXXXXXXXGKYVPRFRR-DRESTGQAPPDSEKWGGGSSRQAPS 602
                                    GKYVP+FRR   E+ G  PP++++WG   SR    
Sbjct: 833 ------------TAAPAAAAAAPAPGKYVPKFRRGGGETAGAPPPEADRWGNSGSR---P 877

Query: 603 EPERW 607
           + +RW
Sbjct: 878 DGDRW 882


>IMGA|Medtr7g104030.1 Proteasome component region PCI
           chr07_pseudomolecule_IMGAG_V3 23489996-23484670 E
           EGN_Mt090430 20090702
          Length = 850

 Score =  302 bits (773), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 154/228 (67%), Positives = 181/228 (79%), Gaps = 2/228 (0%)

Query: 4   LKMKKSATCRMANLIGFNLDPKPESREALSRPSLLSELISKGVLSCATQEVKDLYHLLEN 63
           L+ +K    RMANLIGFNL  K  S + LSR SLL+EL SKGV+SC  QEVKD+Y+LLEN
Sbjct: 338 LEHEKERNLRMANLIGFNLKNKMNSSKVLSRSSLLAELASKGVMSCVAQEVKDIYYLLEN 397

Query: 64  EFLPLDLAAKVQPLLSKISKLGGKIASASSVPEVQLSQYVPALEKLATLRLLQQVSQVYQ 123
           +FLP D A KV PLL+KISKLGGK + ASSVPEVQLSQYVPAL+KLATLRLLQQVS VYQ
Sbjct: 398 KFLPSDFALKVPPLLNKISKLGGKFSFASSVPEVQLSQYVPALKKLATLRLLQQVSNVYQ 457

Query: 124 MMKIESLSQMIPFLDFSVVEKISVDAVKHNFLAMKVEHTKGVILFNNLGLESDGLRDHLA 183
            MK+E+L+ M+PF DFSVVEKISVDAV   FL+MKV+H K V++F    LE+DGLRDHLA
Sbjct: 458 TMKVENLAGMMPFSDFSVVEKISVDAVNQKFLSMKVDHMKKVVIFCKKSLEADGLRDHLA 517

Query: 184 IFAESLNKVRALIYPPAKKSSKLGEILPGLGEIVDKEHKRLLARKSII 231
             + +LNK R +I PP +K SKLG +LP L E+V K+HK LLARKSII
Sbjct: 518 --SSALNKAREMISPPDRKQSKLGPLLPSLLEVVAKDHKILLARKSII 563



 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/135 (58%), Positives = 96/135 (71%), Gaps = 18/135 (13%)

Query: 325 ERALSEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAFQRRLVEEKALNEHEQQ 384
           E  L+ QLR RQEMEKKL+KL+KTMD+LERAKREE+APLIEAA+Q+RLVEE+ L+E EQQ
Sbjct: 625 ELNLTNQLRMRQEMEKKLKKLSKTMDFLERAKREESAPLIEAAYQQRLVEERILHEREQQ 684

Query: 385 LEIELSRQRHDGDLREKNRLSRMLENKMIFQERVMSRRQAEFDRLRTEREERINQIIQAR 444
            E EL           K RLS  +ENK IF+E+V +RR+ EF+RL  EREE       +R
Sbjct: 685 QEAEL-----------KERLSHRMENKQIFEEKVFNRRKVEFNRLGGEREE-------SR 726

Query: 445 KQEREANRKKIFYVR 459
           KQERE  RK   Y+R
Sbjct: 727 KQEREKMRKLKHYLR 741


>IMGA|Medtr7g117270.1 Eukaryotic translation initiation factor 3
           subunit A, putative chr07_pseudomolecule_IMGAG_V3
           27364574-27366253 E EGN_Mt090430 20090702
          Length = 230

 Score =  174 bits (442), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 95/142 (66%), Positives = 117/142 (82%)

Query: 317 KVTKQTIMERALSEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAFQRRLVEEK 376
           +++++++M+  L EQLRERQEMEKKLQKLAKTMD+LERAKREEAAPLIEAA+Q  LVEE+
Sbjct: 45  QISRESLMQLTLVEQLRERQEMEKKLQKLAKTMDHLERAKREEAAPLIEAAYQHGLVEER 104

Query: 377 ALNEHEQQLEIELSRQRHDGDLREKNRLSRMLENKMIFQERVMSRRQAEFDRLRTEREER 436
            L E EQQ E+ELSRQRH  DL EK RLSRM+  K I+QERV+S RQ EF+RL  EREER
Sbjct: 105 ILYEREQQQEVELSRQRHAADLIEKERLSRMMGCKEIYQERVVSHRQVEFNRLMREREER 164

Query: 437 INQIIQARKQEREANRKKIFYV 458
           I++I+ +RKQERE  RK  +Y+
Sbjct: 165 ISRILPSRKQEREKMRKLKYYL 186


>IMGA|Medtr7g043410.1 Eukaryotic translation initiation factor 3
           subunit A, related chr07_pseudomolecule_IMGAG_V3
           10728067-10729128 E EGN_Mt090430 20090702
          Length = 196

 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 85/192 (44%), Gaps = 47/192 (24%)

Query: 189 LNKVRALIYPPAKKSSKLGEILPGLGEIVDKEHKRLLARKSIIXXXXXXXXXXXXXXXXX 248
           +NK + +I PP +K SKLG +L  L E+V +E K+LLA                      
Sbjct: 1   MNKAKQMICPPDRKQSKLGALLSSLSEVVAEERKKLLA----------------PEMEQA 44

Query: 249 XXXXXXXXXXKREEAEQKRLAAEIEQRKNXXXXXXXXXXXXXXXXXXXXDVDKRSKRKGG 308
                       E AE+ RL A +EQR+N                    +          
Sbjct: 45  EESKRLRVQQITEGAEEMRLTAALEQRRNQRICREITERDYKQTQVSLQE---------A 95

Query: 309 KKPILEGEKVTKQTIMERALSEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAF 368
           KKP                       +++MEK L+KL KT+D+LERAKR ++APLIEAA+
Sbjct: 96  KKPF----------------------KRQMEKILKKLIKTIDFLERAKRGKSAPLIEAAY 133

Query: 369 QRRLVEEKALNE 380
           Q+ L+EE+ L++
Sbjct: 134 QQCLMEERILHD 145