Jatropha Genome Database

JcCB0094931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0094931.10 - phase: 0 
         (140 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g013750.1 Casein kinase II, regulatory subunit chr05_...   231   6e-62
IMGA|Medtr5g013750.2 Casein kinase II, regulatory subunit chr05_...   231   1e-61

>IMGA|Medtr5g013750.1 Casein kinase II, regulatory subunit
           chr05_pseudomolecule_IMGAG_V3 4206290-4210104 E
           EGN_Mt090430 20090702
          Length = 286

 Score =  231 bits (590), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 108/135 (80%), Positives = 116/135 (85%), Gaps = 13/135 (9%)

Query: 19  GDMFTEEQNELVESAAEMLYGLIHVRYILTTKGMAAMLEKYKNYDFGRCPRVYCCGQPCL 78
           GDMFTEEQNEL+ESAAEMLYG+IH RYILT+KG+AAML+KYKNYDFGRCPRVYC GQPCL
Sbjct: 152 GDMFTEEQNELIESAAEMLYGMIHARYILTSKGLAAMLDKYKNYDFGRCPRVYCSGQPCL 211

Query: 79  PVGQSDIPRSSTVKIYCPK-------------YIDGAYFGTTFPHLFLMTYGHLKPQKAA 125
           PVGQSDIPRSSTVKIYCP+              IDGAYFGTTFPHL LMTYG LKPQK +
Sbjct: 212 PVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLLLMTYGQLKPQKPS 271

Query: 126 QSYVPRVFGFKLHKP 140
           Q+YVPRVFGFKLHKP
Sbjct: 272 QNYVPRVFGFKLHKP 286


>IMGA|Medtr5g013750.2 Casein kinase II, regulatory subunit
           chr05_pseudomolecule_IMGAG_V3 4206290-4210104 E
           EGN_Mt090430 20090702
          Length = 281

 Score =  231 bits (589), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 108/135 (80%), Positives = 116/135 (85%), Gaps = 13/135 (9%)

Query: 19  GDMFTEEQNELVESAAEMLYGLIHVRYILTTKGMAAMLEKYKNYDFGRCPRVYCCGQPCL 78
           GDMFTEEQNEL+ESAAEMLYG+IH RYILT+KG+AAML+KYKNYDFGRCPRVYC GQPCL
Sbjct: 147 GDMFTEEQNELIESAAEMLYGMIHARYILTSKGLAAMLDKYKNYDFGRCPRVYCSGQPCL 206

Query: 79  PVGQSDIPRSSTVKIYCPK-------------YIDGAYFGTTFPHLFLMTYGHLKPQKAA 125
           PVGQSDIPRSSTVKIYCP+              IDGAYFGTTFPHL LMTYG LKPQK +
Sbjct: 207 PVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLLLMTYGQLKPQKPS 266

Query: 126 QSYVPRVFGFKLHKP 140
           Q+YVPRVFGFKLHKP
Sbjct: 267 QNYVPRVFGFKLHKP 281