Jatropha Genome Database

JcCB0089711.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0089711.20 - phase: 0 /TE
         (278 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g074430.1 integrase, related chr08_pseudomolecule_IMG...    75   5e-14
IMGA|Medtr3g058900.1 Zinc finger, CCHC-type chr03_pseudomolecule...    63   2e-10

>IMGA|Medtr8g074430.1 integrase, related
           chr08_pseudomolecule_IMGAG_V3 14788217-14787399 H
           EGN_Mt090430 20090702
          Length = 272

 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 94/183 (51%), Gaps = 10/183 (5%)

Query: 9   SSPPIFIGENYQLWTVKMKAYLQA--YDLWEHVETEKEIPPLPSNP-TMVQIKNHSEEKA 65
           + PP F G+ Y +W  +M+ ++Q   +D W+ +E     P    N  T  + K    +  
Sbjct: 16  TRPPFFDGKKYYIWKHRMQIFVQGTDFDAWKAIEHGPFFPTHIVNGFTKPKSKTEWTDDD 75

Query: 66  KK-----FKAKTCLHSSISDIIFTSIMTCEIAKEIWDSLKNKYQGNEQTKLMQVLNLKRE 120
           KK      +AK  +  ++ +  F+++M CE A+E+W++L+N ++G  + K+ ++  L  E
Sbjct: 76  KKKVHPDSRAKHLISCALCNDEFSNVMYCETAREMWNTLQNIHEGTGEVKMARIGYLTGE 135

Query: 121 FEM*KMRTSGGVKEYVNNLMSNVNKIRLLGEEFPERRVVEKILISLPEKFESKISSLEDT 180
           +E   M+    + +        VN +  LG++ P   +V K+L  L +K+  K+ ++  T
Sbjct: 136 YERFCMKPGENIHDMQMRFYDVVNHLASLGKKIPNEDLVSKVLRCLSKKWRHKVRAI--T 193

Query: 181 KNI 183
           K+I
Sbjct: 194 KSI 196


>IMGA|Medtr3g058900.1 Zinc finger, CCHC-type
           chr03_pseudomolecule_IMGAG_V3 13082612-13083121 H
           EGN_Mt090430 20090702
          Length = 169

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 85/163 (52%), Gaps = 15/163 (9%)

Query: 126 MRTSGGVKEYVNNLMSNVNKIRLLGEEFPERRVVEKILISLPEKFESKISSLEDTKNIFE 185
           M+    +K+Y +++++   ++++ GE   ++ V+EKIL +LP +F+  + ++E+TK++ E
Sbjct: 1   MKKEDKIKDYFSSVLTITKQMKICGETLFDKSVMEKILRTLPSQFDHLVITIEETKDLNE 60

Query: 186 IFVGELTNALQAVEQR-RAFKEDNTIEVALVAKTTNKCLSKRI--------------KFP 230
             + EL  AL+A E +  + KE+   E +L+A+   +   K                K  
Sbjct: 61  AKIEELQGALEAHEMKVTSRKEEKDEEQSLLARFKQEESMKEYWKKKKGKNHQKHGDKPE 120

Query: 231 PCGICKKDNHDENDCWHKGKLQCFNCKKFGHIQKDCRYQNQSN 273
                 K + ++   ++K  +QCFNC+K+GH   +C +    N
Sbjct: 121 SLKSGGKSSKNQGKKFNKKNVQCFNCEKYGHYASECWFNKDRN 163