Jatropha Genome Database

JcCB0089711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0089711.10 + phase: 0 
         (69 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g091490.1 Protein secE/sec61-gamma protein chr05_pseu...   106   4e-24
IMGA|Medtr5g091490.2 Protein secE/sec61-gamma protein chr05_pseu...   104   1e-23
IMGA|Medtr8g129980.1 Protein secE/sec61-gamma protein chr08_pseu...   104   1e-23

>IMGA|Medtr5g091490.1 Protein secE/sec61-gamma protein
          chr05_pseudomolecule_IMGAG_V3 35803902-35800018 E
          EGN_Mt090430 20090702
          Length = 112

 Score =  106 bits (264), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/69 (76%), Positives = 55/69 (79%)

Query: 1  MDALDSVFDPLREFAKDSVRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
          MDA+DSVFDPLREFAKDSVRLVKRCHKPDRKEF+KVA RTAI            KLIFIP
Sbjct: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKEFSKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSS 69
          INNIIVGS 
Sbjct: 61 INNIIVGSG 69


>IMGA|Medtr5g091490.2 Protein secE/sec61-gamma protein
          chr05_pseudomolecule_IMGAG_V3 35803902-35800018 E
          EGN_Mt090430 20090702
          Length = 69

 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/69 (76%), Positives = 55/69 (79%)

Query: 1  MDALDSVFDPLREFAKDSVRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
          MDA+DSVFDPLREFAKDSVRLVKRCHKPDRKEF+KVA RTAI            KLIFIP
Sbjct: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKEFSKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSS 69
          INNIIVGS 
Sbjct: 61 INNIIVGSG 69


>IMGA|Medtr8g129980.1 Protein secE/sec61-gamma protein
          chr08_pseudomolecule_IMGAG_V3 30881417-30883635 E
          EGN_Mt090430 20090702
          Length = 69

 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/69 (76%), Positives = 55/69 (79%)

Query: 1  MDALDSVFDPLREFAKDSVRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
          MDA+DSVFDPLREFAKDSVRLVKRCHKPDRKEF+KVA RTAI            KLIFIP
Sbjct: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKEFSKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSS 69
          INNIIVGS 
Sbjct: 61 INNIIVGSG 69