Jatropha Genome Database
- JcCB0088201.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0088201.20 - phase: 2 /TE
(787 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g088260.1 RNA-directed DNA polymerase (Reverse transc... 128 1e-29
IMGA|Medtr8g125530.1 RNA-directed DNA polymerase (Reverse transc... 127 1e-29
IMGA|Medtr3g009340.1 RNA-directed DNA polymerase (Reverse transc... 127 1e-29
IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse transc... 125 7e-29
IMGA|Medtr1g024000.1 RNA-directed DNA polymerase (Reverse transc... 111 1e-24
IMGA|Medtr7g047570.1 RNA-directed DNA polymerase (Reverse transc... 99 6e-21
IMGA|AC235669_13.1 RNA-directed DNA polymerase (Reverse transcri... 93 4e-19
IMGA|Medtr4g159490.1 RNA-directed DNA polymerase (Reverse transc... 93 5e-19
IMGA|Medtr3g061320.1 RNA-directed DNA polymerase (Reverse transc... 84 2e-16
IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse transc... 79 1e-14
IMGA|Medtr3g010370.1 RNA-directed DNA polymerase (reverse transc... 74 3e-13
IMGA|AC233676_33.1 RNA-directed DNA polymerase (reverse transcri... 70 6e-12
IMGA|AC233668_29.1 RNA-directed DNA polymerase (reverse transcri... 67 4e-11
IMGA|Medtr2g049290.1 RNA-directed DNA polymerase (Reverse transc... 65 9e-11
IMGA|Medtr4g070130.1 RNA-directed DNA polymerase (Reverse transc... 61 2e-09
IMGA|Medtr4g069720.1 RNA-directed DNA polymerase (Reverse transc... 61 2e-09
IMGA|Medtr4g109120.1 RNA-directed DNA polymerase (Reverse transc... 60 3e-09
IMGA|Medtr5g037770.1 RNA-directed DNA polymerase (Reverse transc... 60 3e-09
IMGA|AC233668_7.1 RNA-directed DNA polymerase (Reverse transcrip... 60 5e-09
IMGA|Medtr3g039900.1 RNA-directed DNA polymerase (Reverse transc... 59 8e-09
IMGA|Medtr1g008260.1 RNA-directed DNA polymerase, putative chr01... 58 2e-08
IMGA|AC233655_32.1 RNA-directed DNA polymerase (Reverse transcri... 56 9e-08
IMGA|Medtr1g122160.1 contains similarity to reverse trancriptase... 54 2e-07
IMGA|Medtr2g111130.1 RNA-directed DNA polymerase (Reverse transc... 54 3e-07
IMGA|Medtr2g122180.1 RNA-directed DNA polymerase (reverse transc... 54 3e-07
IMGA|Medtr8g021900.1 contains similarity to reverse trancriptase... 54 3e-07
IMGA|Medtr4g160830.1 Putative ribonuclease H protein At1g65750, ... 53 7e-07
IMGA|Medtr2g114260.1 hypothetical protein chr02_pseudomolecule_I... 53 7e-07
IMGA|Medtr3g025270.1 RNA-directed DNA polymerase (reverse transc... 52 8e-07
IMGA|Medtr7g107300.1 RNA-directed DNA polymerase (reverse transc... 52 8e-07
IMGA|Medtr1g089710.1 RNA-directed DNA polymerase (Reverse transc... 52 2e-06
IMGA|Medtr8g034900.1 contains similarity to reverse trancriptase... 51 2e-06
IMGA|Medtr8g105650.1 reverse transcriptase, putative; 100033-105... 51 2e-06
IMGA|AC225611_8.1 contains similarity to reverse trancriptase, r... 50 5e-06
IMGA|Medtr3g138250.1 RNA-directed DNA polymerase (reverse transc... 49 7e-06
>IMGA|Medtr5g088260.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr05_pseudomolecule_IMGAG_V3
34193929-34195112 H EGN_Mt090430 20090702
Length = 373
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 112/199 (56%), Gaps = 10/199 (5%)
Query: 77 YAPLFFQKFWNIIGFSIEDKILSVLNNGVSLESLNHTFITLIPKIKDPVCNNDFRPISLC 136
+ P F+Q FW + I + S L +G SLN T I LIPK + D+RPI+LC
Sbjct: 66 FNPGFYQHFWQLCSPDIFRECCSWLESGQLPASLNSTNIALIPKGSEQRTMKDWRPIALC 125
Query: 137 NAIFKIITKVIVNRSKIILPYIIHEAXPAFVRGRLIIDNVLLDFKTFHFMKNKXFGRKCY 196
+ +K+++KV+ NR K IL I + AFV GR I+DN ++ + H+MK+K G+K
Sbjct: 126 DVFYKVVSKVLANRLKKILHKCILDNQSAFVPGRPILDNAMVAIEVVHYMKSKTKGKKGN 185
Query: 197 FALNLDMSRAYDRVEWCFFGENYAXNGLXCXLGPGYEMH--DTVSYSILLN----GEPQK 250
AL LD+S+AYDR++W + E G C + M +TV YS+L+N G P
Sbjct: 186 VALKLDISKAYDRIDWLYLKEVMIKMGF-CHRWVNWIMMCIETVDYSVLVNQKLVGPP-- 242
Query: 251 VFHPQRGLRQGDPLCKGLF 269
P RGL+QGDPL LF
Sbjct: 243 -IIPGRGLQQGDPLSPYLF 260
>IMGA|Medtr8g125530.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr08_pseudomolecule_IMGAG_V3
29296065-29298854 H EGN_Mt090430 20090702
Length = 693
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 106/202 (52%), Gaps = 17/202 (8%)
Query: 77 YAPLFFQKFWNIIGFSIEDKILSVLNNGVSLESLNHTFITLIPKIKDPVCNNDFRPISLC 136
+ P FFQKFW++ I + S LNN SLN T I LIPK + D+RPI+LC
Sbjct: 15 FNPGFFQKFWSVCNSDIFSECCSWLNNNQFPPSLNSTNIALIPKGNEQHNMKDWRPIALC 74
Query: 137 NAIFKIITKVIVNRSKIILPYIIHEAXPAFVRGRLIIDNVLLDFKTFHFMKNKXFGRKCY 196
N ++K++ KV+ NR K IL + + AFV GR I+DN ++ + H MK R
Sbjct: 75 NVLYKLVAKVLANRLKNILHKCVSDNQSAFVPGRSILDNAMIAIEVIHHMKISKRLRDKN 134
Query: 197 FALNLDMSRAYDRVEWCFFGENYAXNGLXCXLGPGYEMH---------DTVSYSILLNGE 247
AL LD+S+AYDR++W + E + GY ++V YS+++N E
Sbjct: 135 VALKLDISKAYDRIDWLYLKEVV--------IKIGYANRWIRWIMMCVESVDYSVIVNNE 186
Query: 248 PQKVFHPQRGLRQGDPLCKGLF 269
P GLRQGDPL LF
Sbjct: 187 SVGPIFPGEGLRQGDPLSPYLF 208
>IMGA|Medtr3g009340.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
1329629-1330366 H EGN_Mt090430 20090702
Length = 245
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 105/199 (52%), Gaps = 26/199 (13%)
Query: 80 LFFQKFWNIIGFSIEDKILSVLNNGVSLESLNHTFITLIPKIKDPVCNNDFRPISLCNAI 139
LF+ +W+++G + L VLNN N T I LIPK +P +DF PI+L
Sbjct: 15 LFYHHYWDVLG---TEAALDVLNNNADPSPFNSTNICLIPKKNNPSHPSDFWPIAL---- 67
Query: 140 FKIITKVIVNRSKIILPYIIHEAXPAFVRGRLIIDNVLLDFKTFHFMKNKXFGRKCYFAL 199
KIITK I NR K IL +I AF+ GRLI DN L+ ++ FH++ N +K Y +
Sbjct: 68 -KIITKTIANRLKPILGEVISGNQSAFLPGRLISDNTLMSYEIFHYLSNT-SSKKGYMGM 125
Query: 200 NLDMSRAYDRVEWCFFGENYAXNGLXCXLGPGYEMH---------DTVSYSILLNGEPQK 250
M++AYD+VEW F L G+ TV++SIL++G K
Sbjct: 126 KTVMAKAYDKVEWTFLEATM--------LKMGFPHQFVSTIMRCVTTVTFSILIDGSNSK 177
Query: 251 VFHPQRGLRQGDPLCKGLF 269
F PQRGLRQGDPL LF
Sbjct: 178 EFQPQRGLRQGDPLSPYLF 196
>IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse
transcriptase); Hemopexin; Polynucleotidyl transferase,
Ribonuclease H fold chr02_pseudomolecule_IMGAG_V3
27457173-27452820 H EGN_Mt090430 20090702
Length = 1147
Score = 125 bits (314), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 120/245 (48%), Gaps = 9/245 (3%)
Query: 79 PLFFQKFWNIIGFSIEDKILSVLNNGVSLESLNHTFITLIPKIKDPVCNNDFRPISLCNA 138
P F+++FW + G + L+ G +L T I LIPK P D RPISLCN
Sbjct: 274 PTFYKRFWTLCGEEVVAACRRWLHEGNLPTALGDTNIVLIPKCDHPRTMRDLRPISLCNV 333
Query: 139 IFKIITKVIVNRSKIILPYIIHEAXPAFVRGRLIIDNVLLDFKTFHFMKNKXFGRKCYFA 198
++KI+ K + NR + +L I FV GR I DN+L+ + H++K K +G K A
Sbjct: 334 VYKILAKTLANRLQRVLDKCISVEQSGFVAGRTITDNILIALEIIHYLKCKTWGIKGEAA 393
Query: 199 LNLDMSRAYDRVEWCFFGENYAXNGLXCXLGPGYEMHDT-VSYSILLNGEPQKVFHPQRG 257
L +D+S+ YDRV+W + G M T VSY +L+N + +P RG
Sbjct: 394 LKIDISKTYDRVDWNYLFSIMEKMGFNPIWIKWMRMSVTMVSYHVLVNDDRVGPIYPGRG 453
Query: 258 LRQGDPL--------CKGLFGVDKVSKKFKTITWYPYLXTSSIFISSVFADDSISFVRAS 309
LRQGDPL +G+ + K +++ + + +FADDS F RA+
Sbjct: 454 LRQGDPLSPYLFILCAEGMSTLIKQAERNNILHGVKVCKRAPTVSHLLFADDSFLFFRAN 513
Query: 310 HNSIK 314
N +
Sbjct: 514 ENETR 518
>IMGA|Medtr1g024000.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr01_pseudomolecule_IMGAG_V3
5513052-5515983 E EGN_Mt090430 20090702
Length = 591
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 86/148 (58%)
Query: 68 PLKSSRSXWYAPLFFQKFWNIIGFSIEDKILSVLNNGVSLESLNHTFITLIPKIKDPVCN 127
P KS + P F+Q+FW++ G I ++S L+ G +L T I LI K +DP
Sbjct: 25 PDKSPSPDGFNPAFYQRFWHVCGDDIFQAVVSWLDRGYFPTNLTKTNICLILKCEDPDNM 84
Query: 128 NDFRPISLCNAIFKIITKVIVNRSKIILPYIIHEAXPAFVRGRLIIDNVLLDFKTFHFMK 187
D RPISLCN ++K+++K++ NR K L + E AFV GR I+DN L+ + H MK
Sbjct: 85 KDLRPISLCNVLYKMVSKLLANRLKRCLDKCVSEEQSAFVEGRSILDNALITTEIIHSMK 144
Query: 188 NKXFGRKCYFALNLDMSRAYDRVEWCFF 215
K G + AL +D+++AYD+V W F
Sbjct: 145 RKTKGWRGELALKIDINKAYDKVGWGFL 172
>IMGA|Medtr7g047570.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr07_pseudomolecule_IMGAG_V3
11971058-11973594 E EGN_Mt090430 20090702
Length = 628
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 120/256 (46%), Gaps = 34/256 (13%)
Query: 76 WYAPL-------FFQKFWNIIGFSIEDKILSVLNNGVSLESLNHTFITLIPKIKDPVCNN 128
W AP F+QK W+IIG + D I + + L +N T I LIPK++DP N
Sbjct: 250 WKAPGPDGFPAGFYQKSWSIIGKNTCDFIKKLWCSPEQLAEINSTNICLIPKVQDPQFVN 309
Query: 129 DFRPISLCNAIFKIITKVIVNRSKIILPYIIHEAXPAFVRGRLIIDNVLLDFKTFHFMKN 188
FRPISLCN ++KI++KVIVNR K + I+ F+ GR I +N+++ + H
Sbjct: 310 QFRPISLCNTVYKILSKVIVNRLKNCVAEIVSPFQTGFIPGRSIHENIVVAQEMIH---- 365
Query: 189 KXFGRKCYFALNLDMSRAYDRVEWCFFGENYAXNGLXCXLGPGYEMHD--TVSYSILLNG 246
+ YD + W F GL + MH TV ++ NG
Sbjct: 366 ------------CGSRQTYDNLSWNFIHMTLLEVGLPMEM-INVIMHSVTTVRTNVRWNG 412
Query: 247 EPQKVFHPQRGLRQGDPLCKGLFGV--DK----VSKKFKTITWYPYL--XTSSIFISSVF 298
F P++GLRQGDP+ LF + DK +S+ W T + +F
Sbjct: 413 NRADFFTPKKGLRQGDPISPYLFVICMDKLSHLISEAIDKGDWLDLKTGRTGPMISHLMF 472
Query: 299 ADDSISFVRASHNSIK 314
ADD + F +A+ + ++
Sbjct: 473 ADDLLLFGQATDSQMR 488
>IMGA|AC235669_13.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC235669.1 69436-68759 H EGN_Mt090430
20090702
Length = 225
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Query: 77 YAPLFFQKFWNIIGFSIEDKILSVLNNGVSLESLNHTFITLIPKIKDPVCNNDFRPISLC 136
+ P+FF+ FW IG I + + N G S+ T I LIPK +P +FRPIS C
Sbjct: 39 FQPIFFKHFWERIGDDIRRLVHTTFNMGSINASIAKTLIFLIPKKSNPQRLKNFRPISFC 98
Query: 137 NAIFKIITKVIVNRSKIILPYIIHEAXPAFVRGRLIIDNVLLDFKTFHFMKNKXFGRKCY 196
N IFK+ITK +V+R + +L +I +F+ GR I DN +L + HF+ + + C
Sbjct: 99 NVIFKLITKFLVSRLRPLLVDMISPLQSSFIPGRGITDNAILAQEVVHFIHHSHAKKGCI 158
Query: 197 FALNLDMSRAYDRVEWCFF 215
+ +D +AYDR W F
Sbjct: 159 VS-KIDHEKAYDRHNWDFL 176
>IMGA|Medtr4g159490.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
40247310-40247920 H EGN_Mt090430 20090702
Length = 187
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 79/151 (52%), Gaps = 17/151 (11%)
Query: 128 NDFRPISLCNAIFKIITKVIVNRSKIILPYIIHEAXPAFVRGRLIIDNVLLDFKTFHFMK 187
D RPISLCN ++K++ K++ NR K L + E F + R I+DN L+ + H MK
Sbjct: 2 KDLRPISLCNVLYKMVLKLLTNRLKRCLDKCVLEEQSTFFKSRSILDNALIATEIIHSMK 61
Query: 188 NKXFGRKCYFALNLDMSRAYDRVEWCF---------FGENYAXNGLXCXLGPGYEMHDTV 238
K G + AL +D+S+AYDRV+W F F E + + C +V
Sbjct: 62 RKTKGWRGELALKIDISKAYDRVDWGFLRGVLMRMGFSEKWIQWMMMC--------VSSV 113
Query: 239 SYSILLNGEPQKVFHPQRGLRQGDPLCKGLF 269
+YS+L N + P RGLRQGDPL LF
Sbjct: 114 TYSVLTNFDRVGPIVPGRGLRQGDPLSPYLF 144
>IMGA|Medtr3g061320.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
13555953-13554878 H EGN_Mt090430 20090702
Length = 318
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 94/204 (46%), Gaps = 47/204 (23%)
Query: 81 FFQKFWNIIGFSIEDKILSVLN----NGVSLESLNHTFITLIPKIKDPVCNNDFRPISLC 136
F + FW + D I+ L+ NG + +N+TFI LIPKI+ P NDFRPIS+
Sbjct: 119 FVKDFWP----ELRDDIMHFLSDFHRNGKLSKGINNTFIALIPKIECPQRLNDFRPISMV 174
Query: 137 NAIFKIITKVIVNRSKIILPYIIHEAXPAFVRGRLIIDNVLLDFKTFHFMKNKXFGRKCY 196
+++KI++KV+ NR + ++ + G LI + ++ D K +K
Sbjct: 175 GSLYKILSKVLSNRLRRVI---------QILDGILIANEIVKDAKRL---------KKDL 216
Query: 197 FALNLDMSRAYDRVEWCFFGE-----NYAXNGLXCXLGPG------YEMHDTVSYSILLN 245
+D +A+D + W + NY P E T S S+L+N
Sbjct: 217 LLFKVDFEKAFDSINWSYLEAVMKKMNY----------PTLWRKWIMECVSTASTSVLVN 266
Query: 246 GEPQKVFHPQRGLRQGDPLCKGLF 269
G P F +RGLRQGDP LF
Sbjct: 267 GSPTDEFKLERGLRQGDPFSPFLF 290
>IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse
transcriptase); Polynucleotidyl transferase,
Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3
15868030-15871357 E EGN_Mt090430 20090702
Length = 845
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 73/147 (49%), Gaps = 29/147 (19%)
Query: 132 PISLCNAIFKIITKVIVNRSKIILPYIIHEAXPAFVRGRLIIDNVLLDFKTFHFMKNKXF 191
PI+LCN ++K++ KV+ NR K IL I E+ AFV R I+DN ++ + H MK
Sbjct: 193 PIALCNVLYKLVAKVLANRLKKILHKCISESQSAFVPERSILDNAMIAIEVVHHMKVGKR 252
Query: 192 GRKCYFALNLDMSRAYDRVEWCFFGENYAXNGLXCXLGPGYEMH---------DTVSYSI 242
R AL LD+S+AYDR++W + E L G++ +TV YS+
Sbjct: 253 VRDKNVALKLDISKAYDRIDWLYLKEVM--------LKMGFDSKWVQQIMMCVETVDYSV 304
Query: 243 LLNGEPQKVFHPQRGLRQGDPLCKGLF 269
++N E GDPL LF
Sbjct: 305 IVNNE------------LGDPLSPYLF 319
>IMGA|Medtr3g010370.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
1763115-1762355 H EGN_Mt090430 20090702
Length = 169
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 59/108 (54%)
Query: 80 LFFQKFWNIIGFSIEDKILSVLNNGVSLESLNHTFITLIPKIKDPVCNNDFRPISLCNAI 139
LF IG I + + +VLNN ++N+TFI L PK DP +D+R I L +
Sbjct: 13 LFINLKGETIGPDIINYVFTVLNNMGGPCNINYTFICLFPKENDPKLPSDYRSIFLSIVV 72
Query: 140 FKIITKVIVNRSKIILPYIIHEAXPAFVRGRLIIDNVLLDFKTFHFMK 187
KI+TK I N+ ILP I AF+ RLI DN L ++ FH++K
Sbjct: 73 VKIVTKTIANKINTILPNFISLQQSAFLHNRLIFDNTLFAYQAFHYLK 120
>IMGA|AC233676_33.1 RNA-directed DNA polymerase (reverse
transcriptase), related AC233676.2 127681-128151 H
EGN_Mt090430 20090702
Length = 156
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%)
Query: 81 FFQKFWNIIGFSIEDKILSVLNNGVSLESLNHTFITLIPKIKDPVCNNDFRPISLCNAIF 140
F + FW + I NG +N+TFI LIPK++ NDFRPIS+ +++
Sbjct: 41 FIKDFWPKLQDDFMRFISEFHRNGKLSRGINNTFIALIPKVESSQRLNDFRPISMVESLY 100
Query: 141 KIITKVIVNRSKIILPYIIHEAXPAFVRGRLIIDNVLL 178
K+I+KVI NR +P II E AF+ GR I+D +L+
Sbjct: 101 KVISKVITNRLCQDMPGIISEMQSAFIHGRQILDEILI 138
>IMGA|AC233668_29.1 RNA-directed DNA polymerase (reverse
transcriptase), related AC233668.2 112870-111301 H
EGN_Mt090430 20090702
Length = 281
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 54/98 (55%)
Query: 108 ESLNHTFITLIPKIKDPVCNNDFRPISLCNAIFKIITKVIVNRSKIILPYIIHEAXPAFV 167
E L T I LIPK +P D PISL ++KII+KV+ NR + +LP I + FV
Sbjct: 180 EKLVETNIVLIPKKDNPETTWDLHPISLGKFLYKIISKVLGNRLERLLPKCISQEHLTFV 239
Query: 168 RGRLIIDNVLLDFKTFHFMKNKXFGRKCYFALNLDMSR 205
I+DNVL+ K H MK K G+K A +D S+
Sbjct: 240 ENISILDNVLVASKILHHMKCKSKGKKGEAASKIDTSK 277
>IMGA|Medtr2g049290.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3
13465118-13466957 H EGN_Mt090430 20090702
Length = 509
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 108/269 (40%), Gaps = 58/269 (21%)
Query: 81 FFQKFWNIIGFSIEDKILSVLNNGVSLESLNHTFITLIPKIKDPVCNNDFRPISLCNAIF 140
F+ FW+IIG + N + +LN + LIPK+ ++FRPI+L N F
Sbjct: 173 FYHCFWHIIGGDVVKSTQHFFLNNYIMPNLNSNLLILIPKVIGADTLDNFRPIALANFQF 232
Query: 141 KIITKVIVNRSKIILPYIIHEAXPAFVRGRLIIDNVLLDFKTFHFMKNKXFGRKCYFALN 200
KIITK++ +R II II F+ GR I + +++ + F
Sbjct: 233 KIITKILGDRLGIIAAKIISTHQRGFIPGRSIQECIMVASEVF----------------- 275
Query: 201 LDMSRAYDRVEWCFFGENYAXNGLXCXLGPGYEMHDTVSYSILLNGEPQKVFHPQRGLRQ 260
+W + + SI +NG+ F RG+RQ
Sbjct: 276 ---------CDWII------------------TILHSARLSININGKSVGFFKCTRGVRQ 308
Query: 261 GDPLCKGLF---------GVDKVSKKFKTITWYPYLXTSSIFISS--VFADDSISFVRAS 309
GDPL LF G++++ + + T S++I S ++ADD + F + +
Sbjct: 309 GDPLSPILFCIAEEVLSRGIEELVVRGRMTQIRA---TRSLYIPSHCLYADDILIFCKGT 365
Query: 310 HNSIKRXSRLFLIMGEHXDSMXTWRNPKF 338
++K L G + + + KF
Sbjct: 366 LANVKNLMHLLEGYGNYSGQLINAQKSKF 394
>IMGA|Medtr4g070130.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
13557404-13554904 H EGN_Mt090430 20090702
Length = 447
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 17/113 (15%)
Query: 166 FVRGRLIIDNVLLDFKTFHFMKNKXFGRKCYFALNLDMSRAYDRVEWCFFGENYAXNGLX 225
F+ GRLI+DN ++ + + MK R L LD+S+AYDR++W + +
Sbjct: 72 FIPGRLILDNAMIAIEVIYHMKISKRMRDKNVTLKLDISKAYDRIDWLYLKQIM------ 125
Query: 226 CXLGPGYEMH---------DTVSYSILLNGEPQKVFHPQRGLRQGDPLCKGLF 269
+ G+ H + V Y +++N E P RG RQGDPL LF
Sbjct: 126 --VKMGFVTHWIRWIMMCVEIVDYFVIVNNESVGPIFPGRGFRQGDPLSLYLF 176
>IMGA|Medtr4g069720.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
13373662-13371162 H EGN_Mt090430 20090702
Length = 447
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 17/113 (15%)
Query: 166 FVRGRLIIDNVLLDFKTFHFMKNKXFGRKCYFALNLDMSRAYDRVEWCFFGENYAXNGLX 225
F+ GRLI+DN ++ + + MK R L LD+S+AYDR++W + +
Sbjct: 72 FIPGRLILDNAMIAIEVIYHMKISKRMRDKNVTLKLDISKAYDRIDWLYLKQIM------ 125
Query: 226 CXLGPGYEMH---------DTVSYSILLNGEPQKVFHPQRGLRQGDPLCKGLF 269
+ G+ H + V Y +++N E P RG RQGDPL LF
Sbjct: 126 --VKMGFVTHWIRWIMMCVEIVDYFVIVNNESVGPIFPGRGFRQGDPLSLYLF 176
>IMGA|Medtr4g109120.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
24335493-24334934 H EGN_Mt090430 20090702
Length = 100
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%)
Query: 91 FSIEDKILSVLNNGVSLESLNHTFITLIPKIKDPVCNNDFRPISLCNAIFKIITKVIVNR 150
F + + S LN+ SLN T I LIPK ++ +RPISLCN + K++TKV+ NR
Sbjct: 11 FPMSQECCSWLNDNQIFSSLNATNIVLIPKGREQKTMKYWRPISLCNVLHKLLTKVLANR 70
Query: 151 SKIILPYIIHEAXPAFVRGRLIIDNVLL 178
K++L + FV R I+DN ++
Sbjct: 71 LKLVLRKCVSYNQSTFVSSRSILDNAMI 98
>IMGA|Medtr5g037770.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr05_pseudomolecule_IMGAG_V3
15923468-15924026 H EGN_Mt090430 20090702
Length = 136
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%)
Query: 85 FWNIIGFSIEDKILSVLNNGVSLESLNHTFITLIPKIKDPVCNNDFRPISLCNAIFKIIT 144
FW+I I L G SLN T ITLI K D+RPI+LCN ++K+I+
Sbjct: 39 FWSICSEDIFKDCCEWLELGQFPASLNTTNITLISKDNIHTTVKDWRPITLCNVLYKLIS 98
Query: 145 KVIVNRSKIILPYIIHEAXPAFVRGRLIIDNVL 177
KV+ + K +LP I++ F+ GR I+DN +
Sbjct: 99 KVLADGLKGVLPKCIYDNQSTFLSGRSILDNAM 131
>IMGA|AC233668_7.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC233668.2 19636-19893 H EGN_Mt090430
20090702
Length = 85
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 48/84 (57%)
Query: 128 NDFRPISLCNAIFKIITKVIVNRSKIILPYIIHEAXPAFVRGRLIIDNVLLDFKTFHFMK 187
ND+R I+L N ++K++ KV+ NR K IL I E AF R I+DN ++ + H MK
Sbjct: 2 NDWRLIALWNVLYKLVAKVLANRLKKILHKCISEYQSAFASERSILDNAMISIEAIHHMK 61
Query: 188 NKXFGRKCYFALNLDMSRAYDRVE 211
R AL LD+S+ DR++
Sbjct: 62 VSKKVRDKNVALKLDISKVCDRID 85
>IMGA|Medtr3g039900.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
10722310-10721876 H EGN_Mt090430 20090702
Length = 126
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%)
Query: 81 FFQKFWNIIGFSIEDKILSVLNNGVSLESLNHTFITLIPKIKDPVCNNDFRPISLCNAIF 140
F + FW I NG + +N TFITLI KI + NDFRPISL + ++
Sbjct: 28 FIKDFWPDFQEEFTCFITEFHGNGKLSKGINITFITLIRKIDNSQRVNDFRPISLVSNLY 87
Query: 141 KIITKVIVNRSKIILPYIIHEAXPAFVRGRLIID 174
K+++KV+ NR + + +I E AF+ R I+D
Sbjct: 88 KVLSKVLANRLRCVTESVISETQLAFIHHRQILD 121
>IMGA|Medtr1g008260.1 RNA-directed DNA polymerase, putative
chr01_pseudomolecule_IMGAG_V3 642619-642876 H
EGN_Mt090430 20090702
Length = 85
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 80 LFFQKFWNIIGFSIEDKILSVLNNGVSLESLNHTFITLIPKIKDPVCNNDF 130
LF+Q FWN+IG I D L++LN G + +NHTF++LIPKI +P +D
Sbjct: 35 LFYQIFWNVIGQDILDYTLNILNKGGNPGQINHTFLSLIPKITNPSTPSDL 85
>IMGA|AC233655_32.1 RNA-directed DNA polymerase (Reverse
transcriptase); Endonuclease/exonuclease/phosphatase
AC233655.2 202219-200303 H EGN_Mt090430 20090702
Length = 567
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 79 PLFFQKFWNIIGFSIEDKILSVLNNGVSLESLNHTFITLIPKIKDPVCNNDFRPISLCNA 138
P F+++F + G + LN G +L T I LIPK + P D RPISLCN
Sbjct: 389 PAFYKRFSALCGGEVIKACKQWLNLGYLPTALGETNIVLIPKCEHPRTMKDLRPISLCNV 448
Query: 139 IFKIITKVIVNR 150
++K++ K + NR
Sbjct: 449 VYKMLAKALANR 460
>IMGA|Medtr1g122160.1 contains similarity to reverse trancriptase,
related, putative chr01_pseudomolecule_IMGAG_V3
26789109-26788828 H EGN_Mt090430 20090702
Length = 93
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 407 VLLKAVIQSIPTYTMSCFLLPQDTCSKIEYLMSHFXWRQKNEERK 451
VL++AV Q+IPTY MSCFLLP+ C+KIE + F W ++RK
Sbjct: 39 VLIRAVAQAIPTYYMSCFLLPKGLCTKIEKAVCSFWWGTAGDKRK 83
>IMGA|Medtr2g111130.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3
26299553-26300277 H EGN_Mt090430 20090702
Length = 207
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 62/141 (43%), Gaps = 33/141 (23%)
Query: 129 DFRPISLCNAIFKIITKVIVNRSKIILPYIIHEAXPAFVRGRLIIDNVLLDFKTFHFMKN 188
D R ISLCN ++K+ K AFV I+DN L+ + H +K
Sbjct: 3 DLRLISLCNVLYKMFRK----------------EQSAFVEDHSILDNTLIATEIIHSVKR 46
Query: 189 KXFGRKCYFALNLDMSRAYDRVEWCFFGENYAXNGLXCXLGPGYEMHDTVSYSILLNGEP 248
K G + AL +D+S+AYDRV+ + G+ +G +L+N +
Sbjct: 47 KTNGWRGELALKIDISKAYDRVDGGYL------RGVLMRMG-----------FMLMNFDR 89
Query: 249 QKVFHPQRGLRQGDPLCKGLF 269
P RGLRQ DPL LF
Sbjct: 90 VGPIVPGRGLRQADPLSPYLF 110
>IMGA|Medtr2g122180.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
29251624-29251866 H EGN_Mt090430 20090702
Length = 80
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 130 FRPISLCNAIFKIITKVIVNRSKIILPYIIHEAXPAFVRGRLIIDNVLLDFKTFHFMKNK 189
R ISLCN ++K+++ ++ NR K L + +F+ GR I+DN L+ K H MK K
Sbjct: 4 LRSISLCNILYKMVSNLLANRLKHCLDKCVSGEQSSFIEGRSILDNTLIATKITHSMKRK 63
Query: 190 XFGRKCYFALNLDMSR 205
G + L++D+ R
Sbjct: 64 TKGWRGELTLDIDLVR 79
>IMGA|Medtr8g021900.1 contains similarity to reverse trancriptase,
related, putative chr08_pseudomolecule_IMGAG_V3
4206337-4207793 E EGN_Mt090430 20090702
Length = 357
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 407 VLLKAVIQSIPTYTMSCFLLPQDTCSKIEYLMSHFXWRQKNEERKPIGLNGVGYVFQSR 465
VL++AVIQ++PTY MS FL+P+ C KIE + F W NE+R+ I ++F+ +
Sbjct: 157 VLIRAVIQALPTYVMSMFLIPEGICDKIEQAICRF-WWGGNEDRRRIHWKNKDFLFKPK 214
>IMGA|Medtr4g160830.1 Putative ribonuclease H protein At1g65750,
chr04_pseudomolecule_IMGAG_V3 40910518-40909919 H
EGN_Mt090430 20090702
Length = 199
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 407 VLLKAVIQSIPTYTMSCFLLPQDTCSKIEYLMSHFXWRQKNEERK 451
VL++AV Q IPTY MSCFLLP+ C KIE ++ F W N ++K
Sbjct: 23 VLIRAVTQVIPTYYMSCFLLPKGLCEKIERVVCSFWWGSTNTKKK 67
>IMGA|Medtr2g114260.1 hypothetical protein
chr02_pseudomolecule_IMGAG_V3 26977303-26977923 H
EGN_Mt090430 20090702
Length = 178
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 408 LLKAVIQSIPTYTMSCFLLPQDTCSKIEYLMSHFXWRQKNEERKPIGLNGVGYVFQSR 465
L++AV Q+IPTY MSCFLLP+ CS+IE ++ F W E +K + ++F+S+
Sbjct: 64 LIRAVAQAIPTYIMSCFLLPKGLCSRIEKVVCFF-WWGSTEHKKKMHWTKREHLFKSK 120
>IMGA|Medtr3g025270.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
6508962-6510031 H EGN_Mt090430 20090702
Length = 291
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 118 IPKIKDPVCNNDFRPISLCNAIFKIITKVIVNRSKIILPYIIHEAXPAFVRGRLIIDNVL 177
+ ++ P C NDFRPIS ++KI+ V+ NR + ++ +I ++ AF RG+ I+D ++
Sbjct: 162 VEEVDSPQCVNDFRPISFVGCMYKILANVLANRLRTVIGTVIFDSQSAFDRGKQILDGII 221
Query: 178 L 178
+
Sbjct: 222 I 222
>IMGA|Medtr7g107300.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr07_pseudomolecule_IMGAG_V3
25061037-25062481 E EGN_Mt090430 20090702
Length = 407
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 32/45 (71%)
Query: 407 VLLKAVIQSIPTYTMSCFLLPQDTCSKIEYLMSHFXWRQKNEERK 451
VL+KAV Q+IPTY MSCF+LP+ C+KIE + F W ++ +K
Sbjct: 71 VLIKAVAQAIPTYYMSCFMLPKGLCTKIEKAICSFWWGTTDKNKK 115
>IMGA|Medtr1g089710.1 RNA-directed DNA polymerase (Reverse
transcriptase); Histone H2B; Histone-fold;
Polynucleotidyl transferase, Ribonuclease H fold
chr01_pseudomolecule_IMGAG_V3 17931605-17934389 E
EGN_Mt090430 20090702
Length = 802
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 407 VLLKAVIQSIPTYTMSCFLLPQDTCSKIEYLMSHFXWRQKNEERK 451
VL+KAV+Q+I + MSCFLLPQ+TC IE + F W + +K
Sbjct: 196 VLIKAVVQAIHVFVMSCFLLPQETCDNIERAVCKFWWGSNGDNKK 240
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 41/84 (48%), Gaps = 14/84 (16%)
Query: 237 TVSYSILLNGEPQKVFHPQRGLRQGDPLC-----------KGLFGVDKVSKKFKTITWYP 285
TVS+S+L+ G+P F+PQRGLRQGDPL GL KF I P
Sbjct: 17 TVSFSVLIIGKPSNKFYPQRGLRQGDPLSPYLFILCAEVLSGLLTKGLADGKFHGIQIAP 76
Query: 286 YLXTSSIFISSVFADDSISFVRAS 309
T+ FADDS+ F R+
Sbjct: 77 ---TAPPISHLFFADDSLFFCRSE 97
>IMGA|Medtr8g034900.1 contains similarity to reverse trancriptase,
related, putative chr08_pseudomolecule_IMGAG_V3
7642559-7645649 E EGN_Mt090430 20090702
Length = 541
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 407 VLLKAVIQSIPTYTMSCFLLPQDTCSKIEYLMSHFXWRQKNEERK 451
L++A+ Q+IPTY MSCFLLP+ C KIE + F W + +RK
Sbjct: 39 TLIRAIAQAIPTYVMSCFLLPKGLCEKIEKAVCAFWWGGSDSKRK 83
>IMGA|Medtr8g105650.1 reverse transcriptase, putative;
100033-105622, related chr08_pseudomolecule_IMGAG_V3
23385469-23384651 H EGN_Mt090430 20090702
Length = 244
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 407 VLLKAVIQSIPTYTMSCFLLPQDTCSKIEYLMSHFXWRQKNEERK 451
L++AV Q+IPTY MSCFLLP+ C KIE ++ F W + ++K
Sbjct: 39 TLIRAVAQAIPTYVMSCFLLPKGLCEKIEKVVCAFWWGGTDSKKK 83
>IMGA|AC225611_8.1 contains similarity to reverse trancriptase,
related, putative AC225611.10 67770-68780 H EGN_Mt090430
20090702
Length = 336
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 407 VLLKAVIQSIPTYTMSCFLLPQDTCSKIEYLMSHFXWRQKNEERK 451
VL++ V Q+IPTY MSCFLLP+ C +IE + F W +RK
Sbjct: 39 VLIRVVAQAIPTYIMSCFLLPKSICDRIERAICSFWWGSNETKRK 83
>IMGA|Medtr3g138250.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
35324945-35323011 H EGN_Mt090430 20090702
Length = 613
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 407 VLLKAVIQSIPTYTMSCFLLPQDTCSKIEYLMSHFXWRQKNEERK 451
+L++AV Q+I TY MSCFLLP+ C KIE + F W + +RK
Sbjct: 63 ILIRAVAQAISTYIMSCFLLPKGLCDKIEKAVCAFWWGSTDNKRK 107