Jatropha Genome Database
- JcCB0088201.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0088201.10 + phase: 1 /TE/partial
(578 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 174 8e-44
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 168 5e-42
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 167 1e-41
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 160 2e-39
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 159 5e-39
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 155 6e-38
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 143 2e-34
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud... 104 1e-22
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 92 1e-18
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 80 2e-15
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 75 1e-13
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 66 5e-11
IMGA|Medtr5g039890.1 hypothetical protein chr05_pseudomolecule_I... 65 1e-10
IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein, chr0... 63 3e-10
IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative chr... 61 1e-09
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 61 2e-09
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 60 3e-09
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole... 56 5e-08
IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA po... 55 1e-07
IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG... 53 4e-07
IMGA|Medtr3g097190.1 copia-type polyprotein, putative chr03_pseu... 50 3e-06
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 174 bits (442), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 116/195 (59%), Gaps = 10/195 (5%)
Query: 33 AISSDYVVYSLKHECELSIDKDPVSFQKAMECDNSEKWFNAIKEEMKSMSDSQVWDLVEL 92
+ S + ++ H+CE P S++ E W A+ +E ++ D+ W L L
Sbjct: 320 SFDSQSFIMNISHDCE------PNSYE---EASMDPAWQKAMTQEFLALHDNNTWTLTNL 370
Query: 93 PRSSKQVGCKWVFKTKRDSKGNIERYKARLVAKGYTQKDDIDYKETFSPVSKKDSLRIIL 152
P+ K VGC+WV+K K + G++ERYKARLV KGYTQ IDY ETFSPV K ++R ++
Sbjct: 371 PKDKKSVGCRWVYKVKHKADGSVERYKARLVVKGYTQHHGIDYTETFSPVVKMTTVRTLI 430
Query: 153 ALVTHYDLVLHQMDVKTAFLNGDLEEEVYMDQPEGFATTGKQSLVCKLKKSIYRLKQASC 212
+HQ+DV AFL+GDL EEVYMD P G AT K LVCKL KS+Y LKQAS
Sbjct: 431 VAAAKKQWNIHQLDVNNAFLHGDLHEEVYMDIPPGLATPHK-DLVCKLNKSLYGLKQASR 489
Query: 213 QWYLKFNNTITSYGF 227
QWY K + + G+
Sbjct: 490 QWYEKLTEALHTRGY 504
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 168 bits (426), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 121/181 (66%), Gaps = 4/181 (2%)
Query: 49 LSIDKDPVSFQKAMECDNSEKWFNAIKEEMKSMSDSQVWDLVELPRSSKQVGCKWVFKTK 108
L +P ++ +E + W A++ E+ ++ + WD+V+LP K +GC+W++K K
Sbjct: 733 LQTTPEPTTY---VEASKHDCWNKAMQAELLALEKTGTWDIVDLPAYVKPIGCRWIYKVK 789
Query: 109 RDSKGNIERYKARLVAKGYTQKDDIDYKETFSPVSKKDSLRIILALVTHYDLVLHQMDVK 168
++ G+IERYKARLVAKGYTQ + +DY ET+SPV+K ++R+++AL + ++ LHQ+DV
Sbjct: 790 HNADGSIERYKARLVAKGYTQIEGLDYFETYSPVAKLTTVRLVIALASIHNWHLHQLDVN 849
Query: 169 TAFLNGDLEEEVYMDQPEGFATTGKQSLVCKLKKSIYRLKQASCQWYLKFNNTITSYGFM 228
AFL+G+L+E+VYM P G K VCKLKKS+Y LKQAS QWY K + + ++
Sbjct: 850 NAFLHGELQEDVYMILPPGI-NIAKPHQVCKLKKSLYGLKQASRQWYEKLTSVLIQQHYI 908
Query: 229 K 229
+
Sbjct: 909 Q 909
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 94/166 (56%), Gaps = 2/166 (1%)
Query: 408 LTYRRSTHLEVVGYSDSNYAGCVDSRKSTIGYLFLLAGGAVSWKSGKQFVIATSTMEAKF 467
L + R++ L + G+SD+++AGC+D+RKS G F L +SW++ KQ ++ S+ EA++
Sbjct: 1080 LFFPRNSSLTLQGFSDADWAGCLDTRKSVTGQCFFLGNSLISWRTKKQTTVSRSSSEAEY 1139
Query: 468 VACFEATVHALWLXNFVSGLGIIDSIARPLRIYCDNFGAVFFSXNDRYSKGAKQMDLKYL 527
A AT WL ++ L I + ++P +YCDN A+ + N + + K +++
Sbjct: 1140 RALASATCEIQWLLYLLNDLHI--TCSKPPVLYCDNQSALHIAANPVFHERTKHLEIDCH 1197
Query: 528 SVKEEVQKHKGSIEHIGIDMIIADPLTKGLPPKIFTGHVERMGVVD 573
V+E++Q + + IAD TK L PK F+ + ++G++D
Sbjct: 1198 IVREKLQAGVLKLLPVSSQDQIADFFTKALLPKTFSLLLSKLGLID 1243
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 114/167 (68%), Gaps = 1/167 (0%)
Query: 63 ECDNSEKWFNAIKEEMKSMSDSQVWDLVELPRSSKQVGCKWVFKTKRDSKGNIERYKARL 122
E + E W A++ E++++ + W+ V+LP + K +GC+WVFK KR + G+IERYKARL
Sbjct: 872 EANKHECWQKAMQVELQALEQTGTWNFVDLPPNVKPIGCRWVFKIKRHADGSIERYKARL 931
Query: 123 VAKGYTQKDDIDYKETFSPVSKKDSLRIILALVTHYDLVLHQMDVKTAFLNGDLEEEVYM 182
VAKGYTQ + +DY +TFSPV+K ++R+I+AL + LHQ+DV AFL+GDL+E VYM
Sbjct: 932 VAKGYTQVEGLDYFDTFSPVAKLTTVRLIIALASINHWHLHQLDVNNAFLHGDLQENVYM 991
Query: 183 DQPEGFATTGKQSLVCKLKKSIYRLKQASCQWYLKFNNTITSYGFMK 229
P G + + VCKL KS+Y LKQAS +WY K + + + + +
Sbjct: 992 TLPPGISAKHSNT-VCKLNKSLYGLKQASRKWYDKLTSILLKHQYTQ 1037
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 87/157 (55%), Gaps = 6/157 (3%)
Query: 408 LTYRRSTHLEVVGYSDSNYAGCVDSRKSTIGYLFLLAGGAVSWKSGKQFVIATSTMEAKF 467
L + R++ L++ GYSD+++AGC+D+R+S G F L +SW++ KQ ++ S+ EA++
Sbjct: 1208 LFFPRNSPLQLQGYSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQVTVSRSSSEAEY 1267
Query: 468 VACFEATVHALWLXNFVSGLGIIDSIARPLRIYCDNFGAVFFSXNDRYSKGAKQMDLKYL 527
A AT WL + L + + + ++CDN A+ + N + + K +++
Sbjct: 1268 RALASATCELQWLIYLLQDLHV--TCTKLPVLFCDNQSALHIAANPVFHERTKHLEIDCH 1325
Query: 528 SVKEEVQKHKGSIEHIGIDM--IIADPLTKGLPPKIF 562
V+E++ H G ++ + + +AD TK L P+ F
Sbjct: 1326 IVREKL--HSGILKLLPVSSKEQVADFFTKSLHPQPF 1360
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 124/184 (67%), Gaps = 6/184 (3%)
Query: 49 LSIDK--DPVSFQKAMECDNSEKWFNAIKEEMKSMSDSQVWDLVELPRSSKQVGCKWVFK 106
LS+D +P ++ +A + D W A++ E+ ++ ++ W LV+LP + K + C+W++K
Sbjct: 876 LSLDSHTEPTTYAEASKFDC---WKQAMQVELSALENTGTWKLVDLPPNVKPIVCRWIYK 932
Query: 107 TKRDSKGNIERYKARLVAKGYTQKDDIDYKETFSPVSKKDSLRIILALVTHYDLVLHQMD 166
K + G+IERYKARLVAKGY Q + +DY +T+SPV+K ++R I+AL + +HQ+D
Sbjct: 933 IKHHADGSIERYKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRTIIALAYMNNWHIHQLD 992
Query: 167 VKTAFLNGDLEEEVYMDQPEGFATTGKQSLVCKLKKSIYRLKQASCQWYLKFNNTITSYG 226
V AFL+GDL+E+VYM P+G T K + VCKL KS+Y LKQAS +WY K + + +
Sbjct: 993 VNNAFLHGDLQEDVYMIVPQGI-TPSKSNQVCKLIKSLYGLKQASRKWYEKLTSLLVHHH 1051
Query: 227 FMKT 230
++++
Sbjct: 1052 YLQS 1055
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 89/166 (53%), Gaps = 2/166 (1%)
Query: 408 LTYRRSTHLEVVGYSDSNYAGCVDSRKSTIGYLFLLAGGAVSWKSGKQFVIATSTMEAKF 467
L + R + L + GYSD+++AGC+DSR+S G F L +SWK+ KQ ++ S+ EA++
Sbjct: 1225 LFFPRDSSLFLSGYSDADWAGCLDSRRSISGQCFFLGHSLISWKTKKQLTVSRSSSEAEY 1284
Query: 468 VACFEATVHALWLXNFVSGLGIIDSIARPLRIYCDNFGAVFFSXNDRYSKGAKQMDLKYL 527
A AT WL + L + + + +YCDN A+ + N + + K +++
Sbjct: 1285 RALGAATCELQWLLYLLHDLHV--TTVKLHVLYCDNQSALHIAANPVFHERTKHLEIDCH 1342
Query: 528 SVKEEVQKHKGSIEHIGIDMIIADPLTKGLPPKIFTGHVERMGVVD 573
V+E++Q + + +AD TK L P+ F + ++G+++
Sbjct: 1343 LVREKLQACIMKLLPVTSADQLADFFTKPLLPQPFHTLLFKLGMLN 1388
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 159 bits (401), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 119/174 (68%), Gaps = 4/174 (2%)
Query: 49 LSIDKDPVSFQKAMECDNSEKWFNAIKEEMKSMSDSQVWDLVELPRSSKQVGCKWVFKTK 108
L +P S+ +A + D W +A++ E++++ + W LV+LP + K +GC+W++K K
Sbjct: 887 LHTQPEPKSYAEASKLDC---WKHAMQVELQALEKTGTWKLVDLPPNVKPIGCRWIYKVK 943
Query: 109 RDSKGNIERYKARLVAKGYTQKDDIDYKETFSPVSKKDSLRIILALVTHYDLVLHQMDVK 168
+ G +ERYKARLVAKGY Q + +DY +T+SPV+K ++R+++AL + + LHQ+DV
Sbjct: 944 FHADGTVERYKARLVAKGYNQIEGLDYLDTYSPVAKLTTVRLVIALSSINNWHLHQLDVN 1003
Query: 169 TAFLNGDLEEEVYMDQPEGFATTGKQSLVCKLKKSIYRLKQASCQWYLKFNNTI 222
AFL+GDL+E+VYM P G ++ K + VCKL KS+Y LKQAS +WY K + +
Sbjct: 1004 NAFLHGDLQEDVYMMVPPGIKSS-KLNQVCKLTKSLYGLKQASRKWYEKLTSVL 1056
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 89/166 (53%), Gaps = 2/166 (1%)
Query: 408 LTYRRSTHLEVVGYSDSNYAGCVDSRKSTIGYLFLLAGGAVSWKSGKQFVIATSTMEAKF 467
L + RS+ L + G+SD+++AGC+D+R+S G F L +SW++ KQ ++ S+ EA++
Sbjct: 1234 LFFPRSSSLNLQGFSDADWAGCIDTRRSISGQCFFLGNSLISWRTKKQITVSKSSSEAEY 1293
Query: 468 VACFEATVHALWLXNFVSGLGIIDSIARPLRIYCDNFGAVFFSXNDRYSKGAKQMDLKYL 527
A AT W+ + L + + +YCDN A+ + N + + K +++
Sbjct: 1294 RALASATCELQWILYLLKDLHT--TCPKLPVLYCDNQSAIHIANNPVFHERTKHLEIDCH 1351
Query: 528 SVKEEVQKHKGSIEHIGIDMIIADPLTKGLPPKIFTGHVERMGVVD 573
+++++Q + + +AD TK L PK F + ++G+++
Sbjct: 1352 LIRDKLQSGVLKLLTVSSQDQVADFFTKALLPKPFNILLSKLGLIN 1397
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 155 bits (391), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 105/154 (68%), Gaps = 1/154 (0%)
Query: 74 IKEEMKSMSDSQVWDLVELPRSSKQVGCKWVFKTKRDSKGNIERYKARLVAKGYTQKDDI 133
++ E+ ++ + W +V+LP + K +GC+W+FK K + G+IERYKARLVAKGY Q + +
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIERYKARLVAKGYNQIEGL 60
Query: 134 DYKETFSPVSKKDSLRIILALVTHYDLVLHQMDVKTAFLNGDLEEEVYMDQPEGFATTGK 193
DY +T+SPV+K ++R I+AL + LHQ DV AFL+G+L+E+VYM P G +
Sbjct: 61 DYFDTYSPVAKLTTVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPGVPHS-H 119
Query: 194 QSLVCKLKKSIYRLKQASCQWYLKFNNTITSYGF 227
Q VCKL KS+Y L+QAS +WY K N + S G+
Sbjct: 120 QDEVCKLNKSLYGLQQASMKWYEKLTNILISTGY 153
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 98/142 (69%), Gaps = 3/142 (2%)
Query: 49 LSIDKDPVSFQKAMECDNSEKWFNAIKEEMKSMSDSQVWDLVELPRSSKQVGCKWVFKTK 108
L +P S+ E + E W A++ E+ ++ ++ W +++LP ++K +GC+W++K K
Sbjct: 906 LHAHTEPKSY---TEANKFECWRQAMQVELTALENTGTWKIIDLPSNAKPIGCRWIYKVK 962
Query: 109 RDSKGNIERYKARLVAKGYTQKDDIDYKETFSPVSKKDSLRIILALVTHYDLVLHQMDVK 168
+ G IERYKARLVAKGY Q + +DY +T+SPV+K ++R++LAL + + LHQ+DV
Sbjct: 963 HHADGTIERYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRLVLALASLNNWHLHQLDVN 1022
Query: 169 TAFLNGDLEEEVYMDQPEGFAT 190
AFL+GDL+E+VYMD P G +T
Sbjct: 1023 NAFLHGDLQEDVYMDIPPGVST 1044
>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
EGN_Mt090430 20090702
Length = 149
Score = 104 bits (259), Expect = 1e-22, Method: Composition-based stats.
Identities = 50/146 (34%), Positives = 84/146 (57%), Gaps = 28/146 (19%)
Query: 74 IKEEMKSMSDSQVWDLVELPRSSKQVGCKWVFKTKRDSKGNIERYKARLVAKGYTQKDDI 133
++ E+ ++ ++ W LV+LP + K +GC+W++K K + G+I+RYKARLV KGY Q +
Sbjct: 1 MQAEITALENTGTWKLVDLPPNVKPIGCRWIYKIKHYADGSIQRYKARLVVKGYNQVEGW 60
Query: 134 DYKETFSP----------------------------VSKKDSLRIILALVTHYDLVLHQM 165
DY +T+SP V+K ++R ++AL + +H++
Sbjct: 61 DYFDTYSPVAKLTTARLVVKGYNQVEGWDYFDTYSLVAKMTTVRTVIALASINQWHIHKL 120
Query: 166 DVKTAFLNGDLEEEVYMDQPEGFATT 191
D +AFL+GDL+E+VYM P+G T+
Sbjct: 121 DANSAFLHGDLQEDVYMLIPQGITTS 146
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 62/88 (70%)
Query: 63 ECDNSEKWFNAIKEEMKSMSDSQVWDLVELPRSSKQVGCKWVFKTKRDSKGNIERYKARL 122
E + E W A++ E+ ++ ++ W +++ P ++K +GC+W++K K ++ IERYKARL
Sbjct: 297 EANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKIKHNADDTIERYKARL 356
Query: 123 VAKGYTQKDDIDYKETFSPVSKKDSLRI 150
VAKGY Q + +DY +T+SPV+K ++R+
Sbjct: 357 VAKGYNQVEGLDYFDTYSPVAKHTTIRL 384
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 408 LTYRRSTHLEVVGYSDSNYAGCVDSRKSTIGYLFLLAGGAVSWKSGKQFVIATSTMEAKF 467
L + RS+ + GYSD+++AGC D+R+S G F L +SW++ KQ ++ S+ EA++
Sbjct: 575 LHFPRSSLPYIQGYSDADWAGCRDTRRSISGQCFFLGDSLISWRTKKQLTVSRSSSEAEY 634
Query: 468 VACFEATVHALW 479
A AT + ++
Sbjct: 635 RALGAATSNPVF 646
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 4/157 (2%)
Query: 416 LEVVGYSDSNYAGCVDSRKSTIGYLFLLAGGAVSWKSGKQFVIATSTMEAKFVACFEATV 475
L++V Y DS++A C +R+ST GYL L +SWK+ KQ ++ S+ EA++ A +A
Sbjct: 149 LQLVAYCDSDWASCPLTRRSTSGYLMKLGSAPISWKTKKQSTVSKSSSEAEYRAMGQAVS 208
Query: 476 HALWLXNFVSGLGI-IDSIARPLRIYCDNFGAVFFSXNDRYSKGAKQMDLKYLSVKEEVQ 534
+WL + +S L + DS P + CDN A+ + N Y + K +++ ++ +Q
Sbjct: 209 EVIWLRSLLSSLQVHYDS---PTVLLCDNQAAMHLAANPVYHERTKHIEVDCHFIRTHLQ 265
Query: 535 KHKGSIEHIGIDMIIADPLTKGLPPKIFTGHVERMGV 571
+ S ++ AD TK L K F ++GV
Sbjct: 266 EGTISTSYVPTKKQQADIFTKALGAKQFQELTFKLGV 302
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%)
Query: 63 ECDNSEKWFNAIKEEMKSMSDSQVWDLVELPRSSKQVGCKWVFKTKRDSKGNIERYKARL 122
E + E W A++ E+ ++ ++ W +++ P ++K +GC+W++K K + G IERYKARL
Sbjct: 390 EANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKIKHHADGTIERYKARL 449
Query: 123 VAKGYTQ 129
VAKGY Q
Sbjct: 450 VAKGYNQ 456
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 408 LTYRRSTHLEVVGYSDSNYAGCVDSRKSTIGYLFLLAGGAVSWKSGKQFVIATSTMEAKF 467
L + R++ L + G+SD ++AGCVDSR+S G F + +SW++ KQ ++ S+ EA++
Sbjct: 165 LFFPRNSSLHLQGFSDVDWAGCVDSRRSISGQCFFIGNSLISWRTKKQTTVSRSSSEAEY 224
Query: 468 VACFEATVHALWLXNFVSGLGIIDSIARPLRIYCDN 503
A AT W+ + L I S P+ ++CDN
Sbjct: 225 RALASATCELQWILYLLKDLN-IQSSKLPV-LFCDN 258
>IMGA|Medtr5g039890.1 hypothetical protein
chr05_pseudomolecule_IMGAG_V3 16975120-16975499 H
EGN_Mt090430 20090702
Length = 104
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query: 499 IYCDNFGAVFFSXNDRYSKGAKQMDLKYLSVKEEVQKHKGSIEHIGIDMIIADPLTKGLP 558
IY G V S N++YSKGAK M+LKY +H+ IEHI ++++I D L KG P
Sbjct: 12 IYYGGLGLV--SENNKYSKGAKNMELKYFG-----SEHRVLIEHITLNLMIVDILMKGFP 64
Query: 559 PKIFTGHVERMGVVDKSLLV 578
K+F HVE MG+ LL+
Sbjct: 65 SKVFGSHVENMGMNYNILLM 84
>IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein,
chr08_pseudomolecule_IMGAG_V3 22106944-22106630 H
EGN_Mt090430 20090702
Length = 104
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 53/91 (58%)
Query: 76 EEMKSMSDSQVWDLVELPRSSKQVGCKWVFKTKRDSKGNIERYKARLVAKGYTQKDDIDY 135
++++++ W L L + +GCKW ++ K G IER+K L+ K YT+++ ++
Sbjct: 3 NKLRAITTKNAWSLTALSKDKVVIGCKWEYRIKHKVNGTIERFKTFLMVKDYTRQEGVNS 62
Query: 136 KETFSPVSKKDSLRIILALVTHYDLVLHQMD 166
+TFS V+K + ++L++V +L Q+D
Sbjct: 63 LDTFSLVAKITIVCLLLSIVVAKGRILQQLD 93
>IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 2876704-2878630 E
EGN_Mt090430 20090702
Length = 64
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 165 MDVKTAFLNGDLEEEVYMDQPEGFATTGKQSLVCKLKKSIYRLKQASCQWYLK 217
MDV AFL+GDL+E+VYM P GF T+ + LVCKL+KS Y LK A W+ K
Sbjct: 1 MDVHNAFLHGDLQEDVYMKLPRGFHTSSSR-LVCKLRKSQYVLKHAPQCWFAK 52
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 166 DVKTAFLNGDLEEEVYMDQPEGFATTGKQSLVCKLKKSIYRLKQASCQWYLKFNNTITSY 225
D FL+GDL+E+VYM P+G + + VCKL KS+Y LKQAS +W+ K + + +
Sbjct: 204 DANNTFLHGDLQEDVYMHPPQG-VSPPRPGQVCKLLKSLYGLKQASRRWFEKLISLLLTI 262
Query: 226 GFMK 229
GF++
Sbjct: 263 GFVQ 266
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 69/130 (53%), Gaps = 2/130 (1%)
Query: 411 RRSTHLEVVGYSDSNYAGCVDSRKSTIGYLFLLAGGAVSWKSGKQFVIATSTMEAKFVAC 470
+ + L ++ YSD+++ R+ T +LF+L G +SW S KQ ++A S+ E ++V
Sbjct: 435 QETEQLSMIDYSDADWCRDKRDRRRTTSFLFMLQGAPISWSSKKQPIVALSSCEVEYVVG 494
Query: 471 FEATVHALWLXNFVSGLGIIDSIARPLRIYCDNFGAVFFSXNDRYSKGAKQMDLKYLSVK 530
A A WL N + I + +P+++ DN A+ + N +K ++ K+ ++
Sbjct: 495 SSAACQANWLQNVLEQSMI--KLKQPIKLLIDNKYAINLAKNHISHGKSKHIETKFHYLR 552
Query: 531 EEVQKHKGSI 540
++V K K +I
Sbjct: 553 DQVNKCKINI 562
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 77 EMKSMSDSQVWDLVELPRSSKQVGCKWVFKTKRDSKGNIERYKARLVAKGYTQKDDIDYK 136
++KS +Q W+L++L K + KWVFK K + +G I ++KARLVA+ + +K+ DY
Sbjct: 203 KLKSSGKNQTWELIKLTDGKKAIDVKWVFKLKLNPEGKIVKHKARLVARVFLKKEGFDYT 262
Query: 137 ETFSPVSK 144
E ++K
Sbjct: 263 EVVFKLNK 270
>IMGA|Medtr8g044880.1 polyprotein-like, putative
chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
EGN_Mt090430 20090702
Length = 196
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 19/167 (11%)
Query: 408 LTYRRSTHLEVVGYSDSNYA-GCVDSRKSTIGYLFLLAGGAVSWKSGKQFVIATSTMEAK 466
L + R + L++ GY+++++A GC D+R+S +Q S+ EA+
Sbjct: 15 LFFPRQSSLQIQGYTNADWAVGCKDTRRSI----------------SEQCFFCWSSSEAE 58
Query: 467 FVACFEATVHALWLXNFVSGLGIIDSIARPLRIYCDNFGAVFFSXNDRYSKGAKQMDLKY 526
+ A AT L + L + + +P +YCDN A++ + N + + K +++
Sbjct: 59 YRALASATCELQRLTYLLRDLKV--NCIKPPVLYCDNQSAIYIAANPVFHECTKHLEIDC 116
Query: 527 LSVKEEVQKHKGSIEHIGIDMIIADPLTKGLPPKIFTGHVERMGVVD 573
V+E++Q + I +AD TK L P+ F + ++G++D
Sbjct: 117 HIVREKLQAGLFKLLPISSKDQVADFFTKSLLPQPFNPLLSKLGMLD 163
>IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33353678-33353912 H EGN_Mt090430 20090702
Length = 57
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/40 (60%), Positives = 31/40 (77%)
Query: 96 SKQVGCKWVFKTKRDSKGNIERYKARLVAKGYTQKDDIDY 135
+K VGC+WV+K K + G IE+YKARLVAKGYTQ + D+
Sbjct: 11 AKIVGCRWVYKIKYKASGEIEKYKARLVAKGYTQVEGEDF 50
>IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG_V3
9341518-9340611 H EGN_Mt090430 20090702
Length = 155
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 428 GCVDSRKSTIGYLFLLAGGAVSWKSGKQFVIATSTMEAKFVACFEATVHALWL 480
G D +KST YLF++ +SW S KQ ++A S+ EAK+VA A ALW+
Sbjct: 66 GDQDDKKSTTCYLFMIGAAPISWSSKKQGIVALSSSEAKYVATSYAACQALWI 118
>IMGA|Medtr3g097190.1 copia-type polyprotein, putative
chr03_pseudomolecule_IMGAG_V3 23165389-23165052 H
EGN_Mt090430 20090702
Length = 85
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 420 GYSDSNYAGCVDSRKSTIGYLFLLAGGAVSWKSGKQFVIATSTMEAKFVACFEATVHALW 479
GYSDS+ G R+ST G LF A+SW + +Q + A S+ EA+++A A A+W
Sbjct: 15 GYSDSDRCGDRMDRRSTSGCLFKFNDAAISWCTKRQPITALSSCEAEYIAGTFAACQAIW 74
Query: 480 LXNFVSGL 487
L N + L
Sbjct: 75 LDNVIKEL 82