Jatropha Genome Database

JcCB0087221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0087221.10 - phase: 0 
         (118 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g009030.1 THUMP chr05_pseudomolecule_IMGAG_V3 1873897...    86   3e-18

>IMGA|Medtr5g009030.1 THUMP chr05_pseudomolecule_IMGAG_V3
          1873897-1878562 F EGN_Mt090430 20090702
          Length = 378

 Score = 86.3 bits (212), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/45 (80%), Positives = 42/45 (93%), Gaps = 1/45 (2%)

Query: 25 YLPHNKPVKKKGAYPLHPGVQGFFITCDGGRERQASHEAINVIDS 69
          YLPHNKPVKK G+YPLHPGVQGFFITCDGGRE QA+ EA+N++D+
Sbjct: 17 YLPHNKPVKK-GSYPLHPGVQGFFITCDGGREHQATREALNILDN 60