Jatropha Genome Database

JcCB0086761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0086761.10 + phase: 0 /TE/partial
         (164 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse transc...    58   2e-09
IMGA|Medtr4g021840.1 RNA-directed DNA polymerase, related, putat...    53   6e-08
IMGA|Medtr2g005080.1 RNA-directed DNA polymerase (Reverse transc...    51   3e-07
IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse transc...    49   9e-07

>IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse
           transcriptase); Polynucleotidyl transferase,
           Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3
           15868030-15871357 E EGN_Mt090430 20090702
          Length = 845

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 9/111 (8%)

Query: 62  SPVVSHL-FVDDSMFFLKAKQEKVVRIKYFLSAYEATSYQVVRL-------SLVLMLQMS 113
           +P +SHL F DD   F K    +   +K  L  YE  S Q + L       S V+ L + 
Sbjct: 348 APTISHLLFADDCFLFFKVDDNEAQVMKNILHTYELASGQTISLPKYEVFFSTVVPLPLK 407

Query: 114 CRRSSVLYYRFLKRTFANYLGMLMSLGRNKNIAFCFLVDQVWKRLQSWKSK 164
              +++L  R +  T   YLG+   +GR+K   F F+ D++W ++ SW SK
Sbjct: 408 ETITNILGVRAVMGT-GKYLGLPSMVGRSKEATFGFIKDRIWHKINSWSSK 457


>IMGA|Medtr4g021840.1 RNA-directed DNA polymerase, related, putative
           chr04_pseudomolecule_IMGAG_V3 4275704-4277642 H
           EGN_Mt090430 20090702
          Length = 171

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 27/120 (22%)

Query: 62  SPVVSHL-FVDDSMFFLKAKQEKVVRIKYFLSAYEATSYQVVRLSLVLMLQMSCRRSSVL 120
            P VSHL F DD   F +AK  +V  +   L  YE  S Q V L+          +S V 
Sbjct: 19  GPAVSHLLFADDCFIFCRAKVNEVQHLISILREYEEASGQQVNLA----------KSEVF 68

Query: 121 YYRFL----KRTFAN------------YLGMLMSLGRNKNIAFCFLVDQVWKRLQSWKSK 164
           +   +    K+  AN            YLG+   +GR+K   F ++ D++W+++ SW+ +
Sbjct: 69  FGNNMSQAAKQDLANILGVKHALGTGTYLGLPSMVGRSKKATFGYIKDKIWRKINSWRGR 128


>IMGA|Medtr2g005080.1 RNA-directed DNA polymerase (Reverse
           transcriptase) chr02_pseudomolecule_IMGAG_V3 86385-88912
           E EGN_Mt090430 20090702
          Length = 566

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 9/111 (8%)

Query: 62  SPVVSHL-FVDDSMFFLKAKQEKVVRIKYFLSAYEATSYQVVRLS---LVLMLQMSCRR- 116
           +PVVSHL F D+   F +A   +  R+   L  YEA S Q + LS   +     MS    
Sbjct: 53  APVVSHLLFADNCFLFCRANVVEAQRLLTILKTYEAASGQEINLSKSEVFFSRNMSGAAQ 112

Query: 117 ---SSVLYYRFLKRTFANYLGMLMSLGRNKNIAFCFLVDQVWKRLQSWKSK 164
              S ++  R +  T   YLG+   + R+K   F F+ D +WKR+  W+ +
Sbjct: 113 EDLSRIIGVRHVMGT-GKYLGLPSMIDRDKWSVFSFIKDSIWKRINVWRGR 162


>IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse
           transcriptase); Hemopexin; Polynucleotidyl transferase,
           Ribonuclease H fold chr02_pseudomolecule_IMGAG_V3
           27457173-27452820 H EGN_Mt090430 20090702
          Length = 1147

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 27/120 (22%)

Query: 62  SPVVSHL-FVDDSMFFLKAKQEKVVRIKYFLSAYEATSYQVVRLSLVLMLQMSCRRSSVL 120
           +P VSHL F DDS  F +A + +   +K  L  Y   S Q++ +          ++S + 
Sbjct: 494 APTVSHLLFADDSFLFFRANENETRALKDILDTYANASDQLINM----------QKSEIY 543

Query: 121 YYRFL----KRTFAN------------YLGMLMSLGRNKNIAFCFLVDQVWKRLQSWKSK 164
           + R +    K T +N            YLG+   +GR+K   F ++ D++W R+    SK
Sbjct: 544 FSRNVPVTKKNTLSNMLWVSEGIGIRKYLGLPSMIGRSKKSIFNYIKDRIWNRISGLSSK 603