Jatropha Genome Database

JcCB0086571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0086571.10 - phase: 0 
         (386 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g068510.1 FAD-dependent glycerol-3-phosphate dehydrog...   540   e-154

>IMGA|Medtr1g068510.1 FAD-dependent glycerol-3-phosphate
           dehydrogenase chr01_pseudomolecule_IMGAG_V3
           13680218-13674245 E EGN_Mt090430 20090702
          Length = 626

 Score =  540 bits (1391), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 267/389 (68%), Positives = 296/389 (76%), Gaps = 15/389 (3%)

Query: 5   TRFRRLGVXXXXXXXXXXXGG-FLSPTFATNDHGVRPALDPVKQKITDPNAVVPSRAAQE 63
           TR RRLG            G   LSP++ +NDHG + A    +QKI DPNAV+PSR  Q+
Sbjct: 2   TRLRRLGTAIGVAAATAYGGAILLSPSYTSNDHGSQVA--AFQQKIHDPNAVLPSRQVQQ 59

Query: 64  SVLIGATTANPLDXXXXXXXXXXXXXXXXXXXRGLRVGLVERDDFSSG------------ 111
           S LIG+T+ANPLD                   RGLRVGLVER+DFSSG            
Sbjct: 60  SSLIGSTSANPLDILVIGGGATGTGVALDATTRGLRVGLVEREDFSSGTSSRSTKLVHGG 119

Query: 112 VRYLEKAVFNLDYGQLRLVFHALEERKQVIDNAPHLCHALPCMTPCFDWFEVVYYWMGLK 171
           VRYLEKAVF LDYGQL+LVFHALEERKQVIDNAPHLC+ALPCMTPCFDWFEVVYYWMGLK
Sbjct: 120 VRYLEKAVFKLDYGQLKLVFHALEERKQVIDNAPHLCNALPCMTPCFDWFEVVYYWMGLK 179

Query: 172 MYDLVAGPRLLHLSRYYSAQESLELFPTLAKKGKDKTLKGTVVYYDGQMNDSRXXXXXXX 231
           MYDLVAG RLLHLSRYYS +ES+ELFPTLA +GK ++L+GTVVYYDGQMND+R       
Sbjct: 180 MYDLVAGARLLHLSRYYSTKESVELFPTLATEGKGRSLRGTVVYYDGQMNDARLNVGLAC 239

Query: 232 XXXXXXXXXXXXXEVISFLKDEADERIIGARIRDNLSGKEFETYAKVVVNAAGPFCDSVR 291
                        EV+S LKD   ERI+GARIRDNL+GKEF+TYAKV+VNAAGPFCDSVR
Sbjct: 240 TAALAGAAVLNHAEVVSLLKDGGGERIVGARIRDNLTGKEFDTYAKVIVNAAGPFCDSVR 299

Query: 292 KMAKNDAQPMICPSSGVHIILPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSN 351
           KMA  + + +ICPSSGVHIILPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRT+AGTTDSN
Sbjct: 300 KMADKNVRDVICPSSGVHIILPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTLAGTTDSN 359

Query: 352 TIITPLPEPHEDEIQFILDAISDYLSVKV 380
           T IT LPEPHEDEIQFILDAISDYL+VKV
Sbjct: 360 TAITFLPEPHEDEIQFILDAISDYLNVKV 388