Jatropha Genome Database

JcCB0086551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0086551.10 - phase: 0 /partial
         (349 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g120930.1 hypothetical protein chr08_pseudomolecule_I...   241   6e-64

>IMGA|Medtr8g120930.1 hypothetical protein
           chr08_pseudomolecule_IMGAG_V3 27848772-27846987 E
           EGN_Mt090430 20090702
          Length = 406

 Score =  241 bits (614), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 109/135 (80%), Positives = 122/135 (90%)

Query: 1   MPRPGPRPYECVRRAWHSDRHQPIRGSLIQEIFRVVNEVHSSATKKNKEWQEKLPVVVLR 60
           MPRPGPRPYECVRRAWHS+RHQP+RGS+IQ+IFRVV E H+ ATKKNKEWQEKLPVVVL+
Sbjct: 1   MPRPGPRPYECVRRAWHSERHQPLRGSIIQQIFRVVTEAHTPATKKNKEWQEKLPVVVLK 60

Query: 61  AEEIMYSKANSEAEYMDLKTLWDRTNDAINTIIRRDESTETGELLQPCIEAALNLGCTPR 120
           AEEIMYSKANSEAEY++  TLWDR NDA+NTIIRRDE+TETG+LL PC+EAALNLGC P 
Sbjct: 61  AEEIMYSKANSEAEYLNSDTLWDRLNDAVNTIIRRDETTETGDLLPPCVEAALNLGCKPV 120

Query: 121 RASRSQRNCNPRCYL 135
           R SRS R+ NPR YL
Sbjct: 121 RTSRSDRHNNPRTYL 135