Jatropha Genome Database

JcCB0085561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0085561.10 + phase: 1 /pseudo/partial
         (315 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g086560.1 FMN-dependent alpha-hydroxy acid dehydrogen...    68   5e-12

>IMGA|Medtr1g086560.1 FMN-dependent alpha-hydroxy acid
          dehydrogenase chr01_pseudomolecule_IMGAG_V3
          17173093-17173767 E EGN_Mt090430 20090702
          Length = 68

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/40 (72%), Positives = 36/40 (90%)

Query: 29 ILIDVSKIDMTTSVLGFKISMPIMIAPTAMQKMAHPEGEY 68
          IL+DVSKID+TT++LG  ISMPI+IAPT +QKMAHPEG +
Sbjct: 24 ILMDVSKIDLTTTILGLNISMPIIIAPTILQKMAHPEGTH 63