Jatropha Genome Database

JcCB0085161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0085161.10 - phase: 0 /partial
         (96 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g104870.1 Heat shock protein DnaJ, N-terminal chr02_p...   145   6e-36

>IMGA|Medtr2g104870.1 Heat shock protein DnaJ, N-terminal
          chr02_pseudomolecule_IMGAG_V3 24852698-24846851 E
          EGN_Mt090430 20090702
          Length = 250

 Score =  145 bits (365), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 68/87 (78%), Positives = 77/87 (88%), Gaps = 2/87 (2%)

Query: 1  MGDKSSTIATATDDDLLLKSFFAEVSEVERDNEVLRILACFKLNPFEHLNLPFDSSPEDV 60
          MG+ +S+  T  +DDLLLK+FFAEVSEVERDNEVLRIL CFKLNPFEHLNL FDSS ++V
Sbjct: 1  MGESNSS--TIIEDDLLLKNFFAEVSEVERDNEVLRILGCFKLNPFEHLNLSFDSSIDEV 58

Query: 61 KKQYRKLSLLVHPDKCKHPQAKEAFAG 87
          KKQYRK+SL+VHPDKCKHPQAKEAF  
Sbjct: 59 KKQYRKISLMVHPDKCKHPQAKEAFGA 85