Jatropha Genome Database
- JcCB0085061.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0085061.20 + phase: 1 /TE/pseudo/partial
(252 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 107 6e-24
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 101 3e-22
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 94 4e-20
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 92 2e-19
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 92 3e-19
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H... 91 6e-19
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole... 87 1e-17
IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger, C... 73 1e-13
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 70 1e-12
IMGA|Medtr7g021510.1 Integrase, catalytic region; Zinc finger, C... 61 4e-10
IMGA|Medtr5g015200.1 Helix-turn-helix, AraC type chr05_pseudomol... 54 6e-08
IMGA|Medtr4g045170.1 hypothetical protein chr04_pseudomolecule_I... 53 2e-07
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 52 3e-07
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 49 2e-06
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 107 bits (266), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 63/84 (75%)
Query: 167 RSSAKSKYRAMAQSACELIWIRQLLDEIGFKSFLPAKLWCDNQAALHIASNPVCHERTKH 226
+SS++++YRAM Q+ E+IW+R LL + P L CDNQAA+H+A+NPV HERTKH
Sbjct: 193 KSSSEAEYRAMGQAVSEVIWLRSLLSSLQVHYDSPTVLLCDNQAAMHLAANPVYHERTKH 252
Query: 227 IKIDCHFIREKIQQGVISTGHVKT 250
I++DCHFIR +Q+G IST +V T
Sbjct: 253 IEVDCHFIRTHLQEGTISTSYVPT 276
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 64/86 (74%)
Query: 167 RSSAKSKYRAMAQSACELIWIRQLLDEIGFKSFLPAKLWCDNQAALHIASNPVCHERTKH 226
RSS++++YRA+A + CE+ W+ LL+++ P L+CDNQ+ALHIA+NPV HERTKH
Sbjct: 1132 RSSSEAEYRALASATCEIQWLLYLLNDLHITCSKPPVLYCDNQSALHIAANPVFHERTKH 1191
Query: 227 IKIDCHFIREKIQQGVISTGHVKTSD 252
++IDCH +REK+Q GV+ V + D
Sbjct: 1192 LEIDCHIVREKLQAGVLKLLPVSSQD 1217
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 62/86 (72%)
Query: 167 RSSAKSKYRAMAQSACELIWIRQLLDEIGFKSFLPAKLWCDNQAALHIASNPVCHERTKH 226
+SS++++YRA+A + CEL WI LL ++ L+CDNQ+A+HIA+NPV HERTKH
Sbjct: 1286 KSSSEAEYRALASATCELQWILYLLKDLHTTCPKLPVLYCDNQSAIHIANNPVFHERTKH 1345
Query: 227 IKIDCHFIREKIQQGVISTGHVKTSD 252
++IDCH IR+K+Q GV+ V + D
Sbjct: 1346 LEIDCHLIRDKLQSGVLKLLTVSSQD 1371
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 58/77 (75%)
Query: 167 RSSAKSKYRAMAQSACELIWIRQLLDEIGFKSFLPAKLWCDNQAALHIASNPVCHERTKH 226
RSS++++YRA+A + CEL W+ LL ++ L+CDNQ+ALHIA+NPV HERTKH
Sbjct: 1260 RSSSEAEYRALASATCELQWLIYLLQDLHVTCTKLPVLFCDNQSALHIAANPVFHERTKH 1319
Query: 227 IKIDCHFIREKIQQGVI 243
++IDCH +REK+ G++
Sbjct: 1320 LEIDCHIVREKLHSGIL 1336
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 62/86 (72%)
Query: 167 RSSAKSKYRAMAQSACELIWIRQLLDEIGFKSFLPAKLWCDNQAALHIASNPVCHERTKH 226
RSS++++YRA+ + CEL W+ LL ++ + L+CDNQ+ALHIA+NPV HERTKH
Sbjct: 1277 RSSSEAEYRALGAATCELQWLLYLLHDLHVTTVKLHVLYCDNQSALHIAANPVFHERTKH 1336
Query: 227 IKIDCHFIREKIQQGVISTGHVKTSD 252
++IDCH +REK+Q ++ V ++D
Sbjct: 1337 LEIDCHLVREKLQACIMKLLPVTSAD 1362
>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr05_pseudomolecule_IMGAG_V3
36507044-36505941 H EGN_Mt090430 20090702
Length = 367
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 57/77 (74%)
Query: 167 RSSAKSKYRAMAQSACELIWIRQLLDEIGFKSFLPAKLWCDNQAALHIASNPVCHERTKH 226
+SS++++YRAMA + CE+ W+ LL + + PA L+CD+Q+A HIA+N HERTKH
Sbjct: 251 KSSSEAEYRAMATTVCEIQWLTYLLQDFNLQFHTPALLYCDSQSARHIAANTSFHERTKH 310
Query: 227 IKIDCHFIREKIQQGVI 243
I++DCH +REK+QQ +
Sbjct: 311 IELDCHIVREKLQQKLF 327
>IMGA|Medtr8g044880.1 polyprotein-like, putative
chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
EGN_Mt090430 20090702
Length = 196
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 59/85 (69%)
Query: 168 SSAKSKYRAMAQSACELIWIRQLLDEIGFKSFLPAKLWCDNQAALHIASNPVCHERTKHI 227
SS++++YRA+A + CEL + LL ++ P L+CDNQ+A++IA+NPV HE TKH+
Sbjct: 53 SSSEAEYRALASATCELQRLTYLLRDLKVNCIKPPVLYCDNQSAIYIAANPVFHECTKHL 112
Query: 228 KIDCHFIREKIQQGVISTGHVKTSD 252
+IDCH +REK+Q G+ + + D
Sbjct: 113 EIDCHIVREKLQAGLFKLLPISSKD 137
>IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger,
CCHC-type; Retrotransposon gag protein, putative
chr04_pseudomolecule_IMGAG_V3 5913545-5913860 H
EGN_Mt090430 20090702
Length = 84
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 175 RAMAQSACELIWIRQLLDEIGFKSFLPAKLWCDNQAALHIASNPVCHERTKHIKIDCHFI 234
+A+AQ+ E WI LD+ P ++CDN +++HI +NPV HERTKHI+IDCH +
Sbjct: 2 QALAQATSEGKWILYFLDDFPIPHSSPIIIYCDNNSSMHIVANPVFHERTKHIEIDCHVV 61
Query: 235 REKIQQ 240
R+KI+
Sbjct: 62 RDKIKH 67
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 35/38 (92%)
Query: 204 LWCDNQAALHIASNPVCHERTKHIKIDCHFIREKIQQG 241
L+CDNQ+ALHIA+NPV +ERTKH+ IDCH +REK+Q+G
Sbjct: 462 LYCDNQSALHIAANPVFYERTKHLDIDCHIVREKVQRG 499
>IMGA|Medtr7g021510.1 Integrase, catalytic region; Zinc finger,
CCHC-type; Retrotransposon gag protein, putative
chr07_pseudomolecule_IMGAG_V3 5264429-5264084 H
EGN_Mt090430 20090702
Length = 98
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%)
Query: 177 MAQSACELIWIRQLLDEIGFKSFLPAKLWCDNQAALHIASNPVCHERTKHIKIDCHFI 234
MA + CEL WI+ LL ++ P L C++Q ALHIA V H RTK+I++DCHFI
Sbjct: 1 MANTTCELKWIKSLLLDLNILHKGPMLLNCNSQTALHIAKKLVFHYRTKYIQVDCHFI 58
>IMGA|Medtr5g015200.1 Helix-turn-helix, AraC type
chr05_pseudomolecule_IMGAG_V3 5047325-5042492 H
EGN_Mt090430 20090702
Length = 372
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 174 YRAMAQSACELIWIRQLLDEIGFKSFLPAKLWCDNQAALHIASNPVCHERTKHIKIDCHF 233
++A AQ+ CE I L + L A + DNQ HIA N V E+T HI+IDCH
Sbjct: 70 HQAFAQATCEAQRILYLHQDF---HILHANFY-DNQYGFHIAVNSVFCEQTIHIEIDCHV 125
Query: 234 IREKIQQGVISTGHVKT 250
IR+KIQ G+ G T
Sbjct: 126 IRDKIQAGIQKKGDSST 142
>IMGA|Medtr4g045170.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 10725937-10725201 H
EGN_Mt090430 20090702
Length = 197
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 38/59 (64%)
Query: 194 IGFKSFLPAKLWCDNQAALHIASNPVCHERTKHIKIDCHFIREKIQQGVISTGHVKTSD 252
IG + F+ L DN + +++A NP+ H R+KHI++ H++RE++ +G + H K+ +
Sbjct: 108 IGSQVFIAVTLKIDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSEN 166
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 46/73 (63%)
Query: 168 SSAKSKYRAMAQSACELIWIRQLLDEIGFKSFLPAKLWCDNQAALHIASNPVCHERTKHI 227
SS + +Y + +AC+ W++ +L++ K P KL DN+ A+++A N + H ++KHI
Sbjct: 485 SSCEVEYVVGSSAACQANWLQNVLEQSMIKLKQPIKLLIDNKYAINLAKNHISHGKSKHI 544
Query: 228 KIDCHFIREKIQQ 240
+ H++R+++ +
Sbjct: 545 ETKFHYLRDQVNK 557
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 24/29 (82%)
Query: 215 ASNPVCHERTKHIKIDCHFIREKIQQGVI 243
SNPV HERTKH++IDCH +REK+ G++
Sbjct: 641 TSNPVFHERTKHLEIDCHIVREKLAAGIM 669