Jatropha Genome Database

JcCB0084971.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0084971.10 + phase: 0 /pseudo/partial
         (185 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g158130.1 MT-A70 chr04_pseudomolecule_IMGAG_V3 396043...   274   1e-74
IMGA|Medtr2g121040.1 MT-A70 chr02_pseudomolecule_IMGAG_V3 286205...   248   1e-66
IMGA|Medtr1g126680.1 N-6 Adenine-specific DNA methylase chr01_ps...    80   9e-16

>IMGA|Medtr4g158130.1 MT-A70 chr04_pseudomolecule_IMGAG_V3
           39604348-39608053 E EGN_Mt090430 20090702
          Length = 750

 Score =  274 bits (701), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 134/152 (88%), Positives = 139/152 (91%), Gaps = 1/152 (0%)

Query: 35  GYNRVEEIIWVKTNQLQRIIRTGRTGH*LNHSKEHCLVGILGNPEVNRNIDTDLIVAEVR 94
           GY RVEEIIWVKTNQLQRIIRTGRTGH LNHSKEHCLVGI G+PEVNRNIDTD+IVAEVR
Sbjct: 568 GYKRVEEIIWVKTNQLQRIIRTGRTGHWLNHSKEHCLVGIKGSPEVNRNIDTDVIVAEVR 627

Query: 95  ETSR*PDEMYPVLERISPRTRTLELFARMHNTHAGWMSLGNQLGGVRLVDEGLRARFKAA 154
           ETSR PDEMYP+LERISPRTR LELFARMHNTHAGWMSLGNQL GVRLVDEGLRARFKAA
Sbjct: 628 ETSRKPDEMYPLLERISPRTRKLELFARMHNTHAGWMSLGNQLSGVRLVDEGLRARFKAA 687

Query: 155 YPDVVVQSPSPPWASAMEIDST-ASQMRSPFA 185
           YPDV VQ  SPP ASAME+DS+ A Q RSPFA
Sbjct: 688 YPDVEVQPASPPRASAMEVDSSVAVQTRSPFA 719


>IMGA|Medtr2g121040.1 MT-A70 chr02_pseudomolecule_IMGAG_V3
           28620556-28622400 E EGN_Mt090430 20090702
          Length = 614

 Score =  248 bits (632), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 119/144 (82%), Positives = 129/144 (89%)

Query: 35  GYNRVEEIIWVKTNQLQRIIRTGRTGH*LNHSKEHCLVGILGNPEVNRNIDTDLIVAEVR 94
           GY  VEEIIWVKTNQLQRIIRTGRTGH LNHSKEHCLVGI G+PEVNRNIDT++IV+EVR
Sbjct: 462 GYKCVEEIIWVKTNQLQRIIRTGRTGHWLNHSKEHCLVGIKGSPEVNRNIDTNVIVSEVR 521

Query: 95  ETSR*PDEMYPVLERISPRTRTLELFARMHNTHAGWMSLGNQLGGVRLVDEGLRARFKAA 154
           ETSR PDEMY ++ERISP TR +ELFARMHNTHAGWMSLGNQL GVRLVDEGLRARFKAA
Sbjct: 522 ETSRKPDEMYAMMERISPGTRKVELFARMHNTHAGWMSLGNQLSGVRLVDEGLRARFKAA 581

Query: 155 YPDVVVQSPSPPWASAMEIDSTAS 178
           YPDV VQ  SP  ASAME+DS+ +
Sbjct: 582 YPDVEVQPASPSRASAMELDSSVA 605


>IMGA|Medtr1g126680.1 N-6 Adenine-specific DNA methylase
           chr01_pseudomolecule_IMGAG_V3 28281399-28287872 E
           EGN_Mt090430 20090702
          Length = 1037

 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 67/127 (52%), Gaps = 10/127 (7%)

Query: 35  GYNRVEEIIWVKTNQLQRIIRTGRTGH*L-NHSKEHCLVGILGNPE-------VNRNIDT 86
           G+ R E+I WVKTN+           H L  HSKEHCL+GI G          ++ NIDT
Sbjct: 772 GFRRCEDICWVKTNKSTATPGLRHDSHTLFQHSKEHCLMGIKGTVRRSTDGHIIHANIDT 831

Query: 87  DLIVAEVRE--TSR*PDEMYPVLERISPRTRTLELFARMHNTHAGWMSLGNQLGGVRLVD 144
           D+I+AE     +++ P++MY ++E  +   R LELF   HN  AGW++LG +L       
Sbjct: 832 DVIIAEEPPYGSTQKPEDMYRIVEHFALGRRRLELFGEDHNIRAGWLTLGKELSSSNFNK 891

Query: 145 EGLRARF 151
           E     F
Sbjct: 892 EAYVKNF 898