Jatropha Genome Database

JcCB0084921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0084921.10 - phase: 1 /pseudo
         (389 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g064270.1 Pyridoxal-5-phosphate-dependent enzyme, bet...   100   1e-21
IMGA|Medtr3g068150.1 Pyridoxal-5-phosphate-dependent enzyme, bet...    96   2e-20
IMGA|Medtr5g005850.1 Tryptophan synthase, beta chain and related...    70   2e-12

>IMGA|Medtr3g064270.1 Pyridoxal-5-phosphate-dependent enzyme, beta
           subunit chr03_pseudomolecule_IMGAG_V3 14514672-14518997
           E EGN_Mt090430 20090702
          Length = 466

 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 128/297 (43%), Gaps = 46/297 (15%)

Query: 92  DIPEQVLDIYK--LWRPTPLIRAKRLEKLLDTPA----KIYYKYEGVSPAGSHKPNTAVP 145
           D  +++  I K  + R TPL  A+RL +           IY K E ++  G+HK N AV 
Sbjct: 108 DFQKELAGILKDYVGRETPLYFAERLTEHYKNANGEGPHIYLKREDLNHTGAHKINNAVA 167

Query: 146 QVFYNAQQGIKNLVTETGAGQWGCSLAFACSLFGLGCEVWQVRASYDQKPYRRMMMETWG 205
           Q     + G K ++ ETGAGQ G + A  C+ FGL C ++      +++      M   G
Sbjct: 168 QALLAKKLGKKRIIAETGAGQHGVATATVCARFGLECIIYMGAQDMERQALNVFRMRLLG 227

Query: 206 AKVHPSPSNVTNAGRDILKKDPSTPGSLGIAISEAVEVAATNAD-TKYCLGSVLN----- 259
           A+V P      +AG   LK           A SEA+    TN + T Y LGSV       
Sbjct: 228 AEVRP-----VHAGTATLKD----------ATSEAIRDWVTNVETTHYILGSVAGPHPYP 272

Query: 260 -HVLLHQTIMGEECLKQ-MEAIGETPDMIIGCTGGGSNFAGLSFPFIREKLNGKINPVIR 317
             V     ++G+E  KQ +E  G  PD++I C GGGSN  GL   F+ +      +  + 
Sbjct: 273 MMVREFHAVIGKETRKQALEKWGGKPDILIACVGGGSNAMGLFHEFVDDS-----DVRLI 327

Query: 318 AVEPAA--------CPSLTKGVYAYDYGDTAGMTPLMKMHTLGHDFIPDPIHAGISY 366
            VE A           +LTKG    + G   G    +     G    P  I AG+ Y
Sbjct: 328 GVEAAGFGLNSGKHAATLTKG----EVGVLHGAMSYLLQDDDGQIVEPHSISAGLDY 380


>IMGA|Medtr3g068150.1 Pyridoxal-5-phosphate-dependent enzyme, beta
           subunit chr03_pseudomolecule_IMGAG_V3 15809584-15813010
           E EGN_Mt090430 20090702
          Length = 370

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 120/279 (43%), Gaps = 34/279 (12%)

Query: 103 LWRPTPLIRAKRLEKLLDTPA----KIYYKYEGVSPAGSHKPNTAVPQVFYNAQQGIKNL 158
           + R +PL  A+RL +           +Y K E ++  G+HK N AV Q     + G K +
Sbjct: 25  VGRESPLYFAERLTEHYKRGNGEGPHVYLKREDLNHTGAHKINNAVAQALLAKKLGKKRV 84

Query: 159 VTETGAGQWGCSLAFACSLFGLGCEVWQVRASYDQKPYRRMMMETWGAKVHPSPSNVTNA 218
           + ETGAGQ G + A  C+ FGL C V+      +++      M   GA+V        +A
Sbjct: 85  IAETGAGQHGVATATVCARFGLECVVYMGALDMERQALNVFRMRLLGAEV-----RAVHA 139

Query: 219 GRDILKKDPSTPGSLGIAISEAVEVAATNAD-TKYCLGSVLN------HVLLHQTIMGEE 271
           G   LK           A SEA+    TN + T Y LGSV         V     ++G+E
Sbjct: 140 GTATLKD----------ATSEAIRDWVTNVETTHYILGSVCGPHPYPMMVREFHAVIGKE 189

Query: 272 CLKQ-MEAIGETPDMIIGCTGGGSNFAGLSFPFIREK---LNGKINPVIRAVEPAACPSL 327
             KQ +E  G  PD+++ C GGGSN  GL   FI +K   L G     +         +L
Sbjct: 190 TRKQALEKWGGKPDILVACVGGGSNAIGLFHEFIDDKDVRLIGVEASGLGLESGKHAATL 249

Query: 328 TKGVYAYDYGDTAGMTPLMKMHTLGHDFIPDPIHAGISY 366
           TKG    + G   G    +     G    P  I AG+ Y
Sbjct: 250 TKG----EVGVLHGAMSYLLQDDDGQIIEPHSISAGLDY 284


>IMGA|Medtr5g005850.1 Tryptophan synthase, beta chain and related
           chr05_pseudomolecule_IMGAG_V3 392806-397039 E
           EGN_Mt090430 20090702
          Length = 466

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 117/280 (41%), Gaps = 38/280 (13%)

Query: 103 LWRPTPLIRAKRLEKLLDTPA-----KIYYKYEGVSPAGSHKPNTAVPQVFYNAQQGIKN 157
           + R TPL  A+RL +   +       +IY K E ++  GSHK N A+ Q     + G+K+
Sbjct: 123 VGRETPLYHAQRLSEHYKSKNGGKGPEIYLKREDLNHTGSHKMNNALAQAMIAKRIGLKS 182

Query: 158 LVTETGAGQWGCSLAFACSLFGLGCEVWQVRASYDQKPYRRMMMETWGAKVHPSPSNVTN 217
           +VT TG+G  G + A AC+   L C V+      D++     +M+  GAKV         
Sbjct: 183 VVTATGSGHHGLATAAACAKLALECTVFMAAKDMDRQSSNVRLMKLLGAKVE-------- 234

Query: 218 AGRDILKKDPSTPGSLGIAISEAVEVAATNADTKYCL-GSVL------NHVLLHQTIMGE 270
                     +  G    A SEA      + +  Y L GS +        V   Q+++G+
Sbjct: 235 ----------AVNGCFKDASSEAFRCWVGDLENSYHLSGSAVGPHPCPTMVREFQSVIGK 284

Query: 271 ECLKQM-EAIGETPDMIIGCTGGGSNFAGLSFPFIRE---KLNGKINPVIRAVEPAACPS 326
           E  KQ  E  G  PD+I+   G GSN  G+   F+ +   +L G     +         +
Sbjct: 285 ETRKQAWEKWGGKPDIIVASVGTGSNALGMFHEFLSDTDVRLIGVEAAGLGLESGKHSST 344

Query: 327 LTKGVYAYDYGDTAGMTPLMKMHTLGHDFIPDPIHAGISY 366
           LTKG    + G   G    +     G    P  I AG+ Y
Sbjct: 345 LTKG----EMGVYHGAISYLLQDGDGQIIEPHSIAAGMEY 380