Jatropha Genome Database

JcCB0084431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0084431.10 + phase: 0 /partial
         (379 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g103000.1 hypothetical protein chr03_pseudomolecule_I...    71   7e-13
IMGA|Medtr5g037670.1 hypothetical protein chr05_pseudomolecule_I...    65   7e-11

>IMGA|Medtr3g103000.1 hypothetical protein
          chr03_pseudomolecule_IMGAG_V3 25263180-25259203 H
          EGN_Mt090430 20090702
          Length = 696

 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 28/39 (71%), Positives = 34/39 (87%)

Query: 1  MSETLAWEKWSTFSHNRYLEEVEQFSKPGSVAQKKAYFE 39
          MSE+L W++WS FS NRY+EE E++SKPGSVA KKAYFE
Sbjct: 42 MSESLDWDRWSAFSQNRYVEEAEKYSKPGSVAAKKAYFE 80


>IMGA|Medtr5g037670.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 15838012-15828881 E
           EGN_Mt090430 20090702
          Length = 683

 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 34/37 (91%)

Query: 3   ETLAWEKWSTFSHNRYLEEVEQFSKPGSVAQKKAYFE 39
           ++L+WE+WS+FS N+YLEEVE+ + PGSVAQKKAYFE
Sbjct: 197 DSLSWERWSSFSPNKYLEEVEKCATPGSVAQKKAYFE 233