Jatropha Genome Database

JcCB0083701.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0083701.20 - phase: 2 /pseudo/partial
         (174 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC233656_29.1 Mannose-6-phosphate isomerase, type I AC23365...   108   1e-24

>IMGA|AC233656_29.1 Mannose-6-phosphate isomerase, type I AC233656.1
           117027-112130 E EGN_Mt090430 20090702
          Length = 333

 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 73/143 (51%), Gaps = 53/143 (37%)

Query: 83  AYLYGECIECMATSDNVVRAGLTPKHRDIQTLCSMLTYKQ-------------------- 122
           AYL GECIECMATSDNVVRAGLTPK  D+ TLCSMLTYKQ                    
Sbjct: 189 AYLSGECIECMATSDNVVRAGLTPKFIDVPTLCSMLTYKQGFPEILRGVSMNPYVNKYIP 248

Query: 123 --------------------------------AGEGRMYTQLSKDV-VTEGDVLFAPANT 149
                                           AGEG M T   K   +TEGD LFAPA T
Sbjct: 249 PFEEFEIDRCILPKGQTVVFPAVPGPSIFLVTAGEGSMNTGSPKVYEITEGDALFAPAYT 308

Query: 150 EVTITTTSELCLYRAGVNSRFFQ 172
           E+++ + SEL LYR G+NS+FF+
Sbjct: 309 EISVASESELHLYRTGINSKFFE 331