Jatropha Genome Database

JcCB0083701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0083701.10 + phase: 2 /partial
         (181 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g022820.1 Ribosomal protein S7E chr06_pseudomolecule_...   298   1e-81
IMGA|Medtr4g135830.1 Ribosomal protein S7E chr04_pseudomolecule_...    57   6e-09

>IMGA|Medtr6g022820.1 Ribosomal protein S7E
           chr06_pseudomolecule_IMGAG_V3 5181113-5184402 E
           EGN_Mt090430 20090702
          Length = 191

 Score =  298 bits (762), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 142/164 (86%), Positives = 157/164 (95%)

Query: 18  FDLENTNPELKSDLKDLFINQAVQMDVSGNRKAVVIYVPYRLRKAYRKIHLRLVRELEKK 77
           FDLENTN ELKS+LKDL+IN AVQ+DVSGNRKAVVI+VPYRLRK +RKIH+RLVRELEKK
Sbjct: 28  FDLENTNHELKSELKDLYINSAVQVDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKK 87

Query: 78  FSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTSVHDAMLEDVVYPAEIVGKRIRYRIDG 137
           FSGKDV+LIATRRIVRPPKKGSA QRPRSRTLT+VH+AMLEDVV PAEIVGKR RYR+DG
Sbjct: 88  FSGKDVILIATRRIVRPPKKGSAAQRPRSRTLTAVHEAMLEDVVLPAEIVGKRTRYRVDG 147

Query: 138 SKIIKIFLDPKERNNTEYKLETFAGVYRKLTGKDVVFEYPITEA 181
           SKI+K+FLDPKERNNTEYKLETF+ VYRKL+GKDVVFEYP+TEA
Sbjct: 148 SKIMKVFLDPKERNNTEYKLETFSAVYRKLSGKDVVFEYPVTEA 191


>IMGA|Medtr4g135830.1 Ribosomal protein S7E
           chr04_pseudomolecule_IMGAG_V3 33100754-33100422 E
           EGN_Mt090430 20090702
          Length = 109

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 11/77 (14%)

Query: 105 RSRTLTSVHDAMLE--DVVYPAEIVGKRIRYRI-DGSKIIKIFLDPKERNNTEYKLETFA 161
           R +  T + D +L+     +  + + K     + DGSKI+K+F DPK+RNNT        
Sbjct: 18  RGKKFTEISDGLLQYFCCCWGMQEMKKSTEINVVDGSKIMKVFFDPKDRNNT-------- 69

Query: 162 GVYRKLTGKDVVFEYPI 178
            +YRKL+GKDVVF  P+
Sbjct: 70  AIYRKLSGKDVVFSIPL 86