Jatropha Genome Database

JcCB0083591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0083591.10 + phase: 0 
         (160 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g100750.1 AAA ATPase, central region chr03_pseudomole...    49   1e-06

>IMGA|Medtr3g100750.1 AAA ATPase, central region
           chr03_pseudomolecule_IMGAG_V3 24245152-24251862 F
           EGN_Mt090430 20090702
          Length = 355

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 7/119 (5%)

Query: 22  EGLEAIIFTADGDMRQALNNLQATHSGFRFVNQENVFKVCDQPHPLHVKNMVRQVIEGKF 81
            GL A++  ++GDMR+ALN LQ+TH   + + +E V+     P P  ++ +   ++  ++
Sbjct: 214 SGLSALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQY 273

Query: 82  DDACSGLKQLYDL----GYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDG 136
            ++    K++YD+    G +  DI+  +   +   +M   ++++ + +      R+  G
Sbjct: 274 SES---FKRIYDMKTRKGLALIDIVREVTMFVFKINMPSAVRVQLVNDLADIEYRLSFG 329